PATH=C:\PlatSDK\Bin\Win64\x86\AMD64;C:\PlatSDK\Bin;C:\PlatSDK\Bin\WinNT;C:\cygwin\bin;C:\cpanfly-5.14\var\megalib\bin;C:\Perl64-5.14\site\bin;C:\Perl64-5.14\bin;C:\cygwin\bin;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\WINDOWS\system32\WindowsPowerShell\v1.0;C:\Program Files (x86)\Perforce;C:\instantclient_11_2;C:\cygwin\bin;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\WINDOWS\system32\WindowsPowerShell\v1.0;C:\Program Files (x86)\Perforce;C:\mysql\bin Start 2013-09-18T03:04:39 ActivePerl-1400 CPAN-2.00 LIB=C:\PlatSDK\Lib\AMD64;C:\PlatSDK\Lib\AMD64\atlmfc INCLUDE=C:\PlatSDK\Include;C:\PlatSDK\Include\crt;C:\PlatSDK\Include\crt\sys;C:\PlatSDK\Include\mfc;C:\PlatSDK\Include\atl PATH=C:/CPANFL~1.14/var/libs/bin;C:\PlatSDK\Bin\Win64\x86\AMD64;C:\PlatSDK\Bin;C:\PlatSDK\Bin\WinNT;C:\cygwin\bin;C:\CPANFL~1.14\var\megalib\bin;C:\Perl64-5.14\site\bin;C:\Perl64-5.14\bin;C:\cygwin\bin;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\WINDOWS\system32\WINDOW~1\v1.0;C:\PROGRA~2\Perforce;C:\INSTAN~1;C:\cygwin\bin;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\WINDOWS\system32\WINDOW~1\v1.0;C:\PROGRA~2\Perforce;C:\mysql\bin Reading 'C:\cpanfly-5.14\var\cpan\Metadata' Database was generated on Wed, 18 Sep 2013 08:29:02 GMT Running make for C/CJ/CJFIELDS/BioPerl-1.6.922.tar.gz Checksum for C:\cpanfly-5.14\var\cpan\sources\authors\id\C\CJ\CJFIELDS\BioPerl-1.6.922.tar.gz ok BioPerl-1.6.922 BioPerl-1.6.922/.travis.yml BioPerl-1.6.922/AUTHORS BioPerl-1.6.922/BioPerl.pm BioPerl-1.6.922/BUGS BioPerl-1.6.922/Build.PL BioPerl-1.6.922/Changes BioPerl-1.6.922/DEPENDENCIES BioPerl-1.6.922/DEPRECATED BioPerl-1.6.922/INSTALL BioPerl-1.6.922/INSTALL.SKIP 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BioPerl-1.6.922/t/SeqTools/SeqPattern.t BioPerl-1.6.922/t/SeqTools/SeqStats.t BioPerl-1.6.922/t/SeqTools/SeqUtils.t BioPerl-1.6.922/t/SeqTools/SeqWords.t BioPerl-1.6.922/t/Structure BioPerl-1.6.922/t/Structure/IO.t BioPerl-1.6.922/t/Structure/Structure.t BioPerl-1.6.922/t/Tools BioPerl-1.6.922/t/Tools/AmpliconSearch.t BioPerl-1.6.922/t/Tools/ePCR.t BioPerl-1.6.922/t/Tools/Est2Genome.t BioPerl-1.6.922/t/Tools/FootPrinter.t BioPerl-1.6.922/t/Tools/Geneid.t BioPerl-1.6.922/t/Tools/Genewise.t BioPerl-1.6.922/t/Tools/Genomewise.t BioPerl-1.6.922/t/Tools/Genpred.t BioPerl-1.6.922/t/Tools/GFF.t BioPerl-1.6.922/t/Tools/GuessSeqFormat.t BioPerl-1.6.922/t/Tools/Hmmer.t BioPerl-1.6.922/t/Tools/IUPAC.t BioPerl-1.6.922/t/Tools/Lucy.t BioPerl-1.6.922/t/Tools/Match.t BioPerl-1.6.922/t/Tools/pICalculator.t BioPerl-1.6.922/t/Tools/Primer3.t BioPerl-1.6.922/t/Tools/Promoterwise.t BioPerl-1.6.922/t/Tools/Pseudowise.t BioPerl-1.6.922/t/Tools/QRNA.t BioPerl-1.6.922/t/Tools/RandDistFunctions.t BioPerl-1.6.922/t/Tools/RepeatMasker.t BioPerl-1.6.922/t/Tools/rnamotif.t BioPerl-1.6.922/t/Tools/Seg.t BioPerl-1.6.922/t/Tools/Sigcleave.t BioPerl-1.6.922/t/Tools/Signalp.t BioPerl-1.6.922/t/Tools/Sim4.t BioPerl-1.6.922/t/Tools/SiRNA.t BioPerl-1.6.922/t/Tools/TandemRepeatsFinder.t BioPerl-1.6.922/t/Tools/TargetP.t BioPerl-1.6.922/t/Tools/Tmhmm.t BioPerl-1.6.922/t/Tools/tRNAscanSE.t BioPerl-1.6.922/t/Tools/Alignment BioPerl-1.6.922/t/Tools/Alignment/Consed.t BioPerl-1.6.922/t/Tools/Analysis BioPerl-1.6.922/t/Tools/Analysis/DNA BioPerl-1.6.922/t/Tools/Analysis/DNA/ESEfinder.t BioPerl-1.6.922/t/Tools/Analysis/Protein BioPerl-1.6.922/t/Tools/Analysis/Protein/Domcut.t BioPerl-1.6.922/t/Tools/Analysis/Protein/ELM.t BioPerl-1.6.922/t/Tools/Analysis/Protein/GOR4.t BioPerl-1.6.922/t/Tools/Analysis/Protein/HNN.t BioPerl-1.6.922/t/Tools/Analysis/Protein/Mitoprot.t BioPerl-1.6.922/t/Tools/Analysis/Protein/NetPhos.t BioPerl-1.6.922/t/Tools/Analysis/Protein/Scansite.t BioPerl-1.6.922/t/Tools/Analysis/Protein/Sopma.t BioPerl-1.6.922/t/Tools/EMBOSS BioPerl-1.6.922/t/Tools/EMBOSS/Palindrome.t BioPerl-1.6.922/t/Tools/Phylo BioPerl-1.6.922/t/Tools/Phylo/Gerp.t BioPerl-1.6.922/t/Tools/Phylo/Molphy.t BioPerl-1.6.922/t/Tools/Phylo/PAML.t BioPerl-1.6.922/t/Tools/Phylo/Phylip BioPerl-1.6.922/t/Tools/Phylo/Phylip/ProtDist.t BioPerl-1.6.922/t/Tools/Run BioPerl-1.6.922/t/Tools/Run/Dummy.pm BioPerl-1.6.922/t/Tools/Run/RemoteBlast.t BioPerl-1.6.922/t/Tools/Run/RemoteBlast_rpsblast.t BioPerl-1.6.922/t/Tools/Run/StandAloneBlast.t BioPerl-1.6.922/t/Tools/Run/WBCommandExts.t BioPerl-1.6.922/t/Tools/Run/WrapperBase.t BioPerl-1.6.922/t/Tools/Run/Dummy BioPerl-1.6.922/t/Tools/Run/Dummy/Config.pm BioPerl-1.6.922/t/Tools/Signalp BioPerl-1.6.922/t/Tools/Signalp/ExtendedSignalp.t BioPerl-1.6.922/t/Tools/Spidey BioPerl-1.6.922/t/Tools/Spidey/Spidey.t BioPerl-1.6.922/t/Tree BioPerl-1.6.922/t/Tree/Compatible.t BioPerl-1.6.922/t/Tree/Node.t BioPerl-1.6.922/t/Tree/RandomTreeFactory.t BioPerl-1.6.922/t/Tree/Tree.t BioPerl-1.6.922/t/Tree/TreeIO.t BioPerl-1.6.922/t/Tree/TreeStatistics.t BioPerl-1.6.922/t/Tree/PhyloNetwork BioPerl-1.6.922/t/Tree/PhyloNetwork/Factory.t BioPerl-1.6.922/t/Tree/PhyloNetwork/GraphViz.t BioPerl-1.6.922/t/Tree/PhyloNetwork/MuVector.t BioPerl-1.6.922/t/Tree/PhyloNetwork/PhyloNetwork.t BioPerl-1.6.922/t/Tree/PhyloNetwork/RandomFactory.t BioPerl-1.6.922/t/Tree/PhyloNetwork/TreeFactory.t BioPerl-1.6.922/t/Tree/TreeIO BioPerl-1.6.922/t/Tree/TreeIO/lintree.t BioPerl-1.6.922/t/Tree/TreeIO/newick.t BioPerl-1.6.922/t/Tree/TreeIO/nexml.t BioPerl-1.6.922/t/Tree/TreeIO/nexus.t BioPerl-1.6.922/t/Tree/TreeIO/nhx.t BioPerl-1.6.922/t/Tree/TreeIO/phyloxml.t BioPerl-1.6.922/t/Tree/TreeIO/svggraph.t BioPerl-1.6.922/t/Tree/TreeIO/tabtree.t BioPerl-1.6.922/t/Variation BioPerl-1.6.922/t/Variation/AAChange.t BioPerl-1.6.922/t/Variation/AAReverseMutate.t BioPerl-1.6.922/t/Variation/Allele.t BioPerl-1.6.922/t/Variation/DNAMutation.t BioPerl-1.6.922/t/Variation/RNAChange.t BioPerl-1.6.922/t/Variation/SeqDiff.t BioPerl-1.6.922/t/Variation/SNP.t BioPerl-1.6.922/t/Variation/Variation_IO.t BioPerl-1.6.922/travis_scripts BioPerl-1.6.922/travis_scripts/dependency_installs CPAN.pm: Building C/CJ/CJFIELDS/BioPerl-1.6.922.tar.gz >>> C:\Perl64-5.14\bin\perl.exe Build.PL could not find ParserDetails.ini in C:/cpanfly-5.14/var/megalib/XML/SAX Checking prerequisites... requires: ! DB_File is not installed recommends: * GraphViz is not installed Checking optional features... DB_File Tests.........disabled requires: ! DB_File is not installed EntrezGene............disabled requires: ! Bio::ASN1::EntrezGene is not installed ERRORS/WARNINGS FOUND IN PREREQUISITES. You may wish to install the versions of the modules indicated above before proceeding with this installation ############################# WARNING ############################# Bio::ASN1::EntrezGene not found. This is an *optional* module; however, because it has a circular dependency with BioPerl we do not include it on our list of recommended modules. If you require EntrezGene functionality, you can install Bio::ASN1::EntrezGene after BioPerl has finished installing. ############################# WARNING ############################# Do you want to run the Bio::DB::GFF or Bio::DB::SeqFeature::Store live database tests? y/n [n] - will not run the BioDBGFF or BioDBSeqFeature live database tests Install [a]ll BioPerl scripts, [n]one, or choose groups [i]nteractively? [a] - will install all scripts Do you want to run tests that require connection to servers across the internet (likely to cause some failures)? y/n [n] - will not run internet-requiring tests Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'BioPerl' version '1.006922' ---- Unsatisfied dependencies detected during ---- ---- CJFIELDS/BioPerl-1.6.922.tar.gz ---- DB_File [requires] Running Build test Delayed until after prerequisites Running test for module 'DB_File' ______________________ D i s t r o P r e f s ______________________ DB_File.yml[0] Running make for P/PM/PMQS/DB_File-1.829.tar.gz Disabled via prefs file 'C:\cpanfly-5.14\etc\distroprefs\DB_File.yml' doc 0 PMQS/DB_File-1.829.tar.gz [disabled] -- NA Disabled via prefs file 'C:\cpanfly-5.14\etc\distroprefs\DB_File.yml' doc 0 Running Build for C/CJ/CJFIELDS/BioPerl-1.6.922.tar.gz Has already been unwrapped into directory C:\cpanfly-5.14\var\cpan\build\BioPerl-1.6.922-XM8s0Z CPAN.pm: Building C/CJ/CJFIELDS/BioPerl-1.6.922.tar.gz Warning: Prerequisite 'DB_File => 0' for 'CJFIELDS/BioPerl-1.6.922.tar.gz' failed when processing 'PMQS/DB_File-1.829.tar.gz' with 'unwrapped => NO Disabled via prefs file 'C:\cpanfly-5.14\etc\distroprefs\DB_File.yml' doc 0'. Continuing, but chances to succeed are limited. >>> C:\Perl64-5.14\bin\perl.exe ./Build Timeout (max run time is 420s) C:\Perl64-5.14\bin\perl.exe exits with 37