PATH=/usr/bin:/bin:/Users/fly1600/var/megalib/bin Start 2013-09-06T03:08:18 ActivePerl-1600 CPAN-2.00 Reading '/Users/fly1600/var/cpan/Metadata' Database was generated on Fri, 06 Sep 2013 09:17:02 GMT Running make for M/MA/MAGGIEXYZ/PDL-Stats-0.6.4.tar.gz Checksum for /net/nas/data/cpan/authors/id/M/MA/MAGGIEXYZ/PDL-Stats-0.6.4.tar.gz ok PDL-Stats-0.6.4/ PDL-Stats-0.6.4/Basic/ PDL-Stats-0.6.4/Basic/stats_basic.pp PDL-Stats-0.6.4/Basic/Makefile.PL PDL-Stats-0.6.4/META.yml PDL-Stats-0.6.4/README PDL-Stats-0.6.4/Changes PDL-Stats-0.6.4/TS/ PDL-Stats-0.6.4/TS/Makefile.PL PDL-Stats-0.6.4/TS/ts.pp PDL-Stats-0.6.4/GSL/ PDL-Stats-0.6.4/GSL/gsl_cdf.pd PDL-Stats-0.6.4/GSL/t/ PDL-Stats-0.6.4/GSL/t/cdf.t PDL-Stats-0.6.4/GSL/Makefile.PL PDL-Stats-0.6.4/cpanfile PDL-Stats-0.6.4/t/ PDL-Stats-0.6.4/t/stats_kmeans.t PDL-Stats-0.6.4/t/stats_basic.t PDL-Stats-0.6.4/t/stats_glm.t PDL-Stats-0.6.4/t/stats_ols_rptd.t PDL-Stats-0.6.4/t/stats_ts.t PDL-Stats-0.6.4/add_doc.pl PDL-Stats-0.6.4/META.json PDL-Stats-0.6.4/GLM/ PDL-Stats-0.6.4/GLM/glm.pp PDL-Stats-0.6.4/GLM/Makefile.PL PDL-Stats-0.6.4/Stats.pm PDL-Stats-0.6.4/Kmeans/ PDL-Stats-0.6.4/Kmeans/kmeans.pp PDL-Stats-0.6.4/Kmeans/Makefile.PL PDL-Stats-0.6.4/Makefile.PL PDL-Stats-0.6.4/MANIFEST PDL-Stats-0.6.4/Distr/ PDL-Stats-0.6.4/Distr/distr.pp PDL-Stats-0.6.4/Distr/t/ PDL-Stats-0.6.4/Distr/t/stats_distr.t PDL-Stats-0.6.4/Distr/Makefile.PL CPAN.pm: Building M/MA/MAGGIEXYZ/PDL-Stats-0.6.4.tar.gz >>> /Users/fly1600/ap1600/bin/perl-dynamic Makefile.PL Warning: prerequisite PDL 2.4.4 not found. We have 2.006. Checking if your kit is complete... Looks good Writing Makefile for PDL::Stats::Basic no GSL lib, skip PDL::Stats::Distr Writing Makefile for PDL::Stats::GLM Writing Makefile for PDL::Stats::Kmeans writing dummy Makefile no GSL lib, skip PDL::GSL::CDF Writing Makefile for PDL::Stats::TS Writing Makefile for PDL::Stats Writing MYMETA.yml and MYMETA.json writing dummy Makefile >>> make cp Stats.pm blib/lib/PDL/Stats.pm cp add_doc.pl blib/lib/PDL/add_doc.pl /Users/fly1600/ap1600/bin/perl-dynamic -I/Users/fly1600/var/megalib "-MPDL::PP qw/PDL::Stats::Basic PDL::Stats::Basic Basic/" stats_basic.pp cp Basic.pm ../blib/lib/PDL/Stats/Basic.pm /Users/fly1600/ap1600/bin/perl-dynamic /Users/fly1600/var/megalib/ExtUtils/xsubpp -typemap /Users/fly1600/ap1600/lib/ExtUtils/typemap -typemap /Users/fly1600/var/megalib/PDL/Core/typemap.pdl Basic.xs > Basic.xsc && mv Basic.xsc Basic.c gcc -c -I/Users/fly1600/var/megalib/PDL/Core -fno-common -DPERL_DARWIN -no-cpp-precomp -arch i386 -arch x86_64 -nostdinc -B/Developer/SDKs/MacOSX10.6.sdk/usr/include/gcc -B/Developer/SDKs/MacOSX10.6.sdk/usr/lib/gcc -isystem/Developer/SDKs/MacOSX10.6.sdk/usr/include -F/Developer/SDKs/MacOSX10.6.sdk/System/Library/Frameworks -mmacosx-version-min=10.6 -DUSE_SITECUSTOMIZE -DPERL_RELOCATABLE_INCPUSH -fno-merge-constants -fno-strict-aliasing -pipe -fstack-protector -O3 -DVERSION=\"\" -DXS_VERSION=\"\" "-I/Users/fly1600/ap1600/lib/CORE" Basic.c Running Mkbootstrap for PDL::Stats::Basic () chmod 644 Basic.bs rm -f ../blib/arch/auto/PDL/Stats/Basic/Basic.bundle cc -mmacosx-version-min=10.5 -bundle -undefined dynamic_lookup -Wl,-search_paths_first -arch i386 -arch x86_64 -Wl,-syslibroot,/Developer/SDKs/MacOSX10.6.sdk -mmacosx-version-min=10.6 -fstack-protector Basic.o -o ../blib/arch/auto/PDL/Stats/Basic/Basic.bundle \ \ chmod 755 ../blib/arch/auto/PDL/Stats/Basic/Basic.bundle cp Basic.bs ../blib/arch/auto/PDL/Stats/Basic/Basic.bs chmod 644 ../blib/arch/auto/PDL/Stats/Basic/Basic.bs Manifying ../blib/man3/PDL::Stats::Basic.3 **** no GSL lib, skip PDL::Stats::Distr **** /Users/fly1600/ap1600/bin/perl-dynamic -I/Users/fly1600/var/megalib "-MPDL::PP qw/PDL::Stats::GLM PDL::Stats::GLM GLM/" glm.pp cp GLM.pm ../blib/lib/PDL/Stats/GLM.pm /Users/fly1600/ap1600/bin/perl-dynamic /Users/fly1600/var/megalib/ExtUtils/xsubpp -typemap /Users/fly1600/ap1600/lib/ExtUtils/typemap -typemap /Users/fly1600/var/megalib/PDL/Core/typemap.pdl GLM.xs > GLM.xsc && mv GLM.xsc GLM.c gcc -c -I/Users/fly1600/var/megalib/PDL/Core -fno-common -DPERL_DARWIN -no-cpp-precomp -arch i386 -arch x86_64 -nostdinc -B/Developer/SDKs/MacOSX10.6.sdk/usr/include/gcc -B/Developer/SDKs/MacOSX10.6.sdk/usr/lib/gcc -isystem/Developer/SDKs/MacOSX10.6.sdk/usr/include -F/Developer/SDKs/MacOSX10.6.sdk/System/Library/Frameworks -mmacosx-version-min=10.6 -DUSE_SITECUSTOMIZE -DPERL_RELOCATABLE_INCPUSH -fno-merge-constants -fno-strict-aliasing -pipe -fstack-protector -O3 -DVERSION=\"\" -DXS_VERSION=\"\" "-I/Users/fly1600/ap1600/lib/CORE" GLM.c Running Mkbootstrap for PDL::Stats::GLM () chmod 644 GLM.bs rm -f ../blib/arch/auto/PDL/Stats/GLM/GLM.bundle cc -mmacosx-version-min=10.5 -bundle -undefined dynamic_lookup -Wl,-search_paths_first -arch i386 -arch x86_64 -Wl,-syslibroot,/Developer/SDKs/MacOSX10.6.sdk -mmacosx-version-min=10.6 -fstack-protector GLM.o -o ../blib/arch/auto/PDL/Stats/GLM/GLM.bundle \ \ chmod 755 ../blib/arch/auto/PDL/Stats/GLM/GLM.bundle cp GLM.bs ../blib/arch/auto/PDL/Stats/GLM/GLM.bs chmod 644 ../blib/arch/auto/PDL/Stats/GLM/GLM.bs Manifying ../blib/man3/PDL::Stats::GLM.3 /Users/fly1600/ap1600/bin/perl-dynamic -I/Users/fly1600/var/megalib "-MPDL::PP qw/PDL::Stats::Kmeans PDL::Stats::Kmeans Kmeans/" kmeans.pp cp Kmeans.pm ../blib/lib/PDL/Stats/Kmeans.pm /Users/fly1600/ap1600/bin/perl-dynamic /Users/fly1600/var/megalib/ExtUtils/xsubpp -typemap /Users/fly1600/ap1600/lib/ExtUtils/typemap -typemap /Users/fly1600/var/megalib/PDL/Core/typemap.pdl Kmeans.xs > Kmeans.xsc && mv Kmeans.xsc Kmeans.c gcc -c -I/Users/fly1600/var/megalib/PDL/Core -fno-common -DPERL_DARWIN -no-cpp-precomp -arch i386 -arch x86_64 -nostdinc -B/Developer/SDKs/MacOSX10.6.sdk/usr/include/gcc -B/Developer/SDKs/MacOSX10.6.sdk/usr/lib/gcc -isystem/Developer/SDKs/MacOSX10.6.sdk/usr/include -F/Developer/SDKs/MacOSX10.6.sdk/System/Library/Frameworks -mmacosx-version-min=10.6 -DUSE_SITECUSTOMIZE -DPERL_RELOCATABLE_INCPUSH -fno-merge-constants -fno-strict-aliasing -pipe -fstack-protector -O3 -DVERSION=\"\" -DXS_VERSION=\"\" "-I/Users/fly1600/ap1600/lib/CORE" Kmeans.c Running Mkbootstrap for PDL::Stats::Kmeans () chmod 644 Kmeans.bs rm -f ../blib/arch/auto/PDL/Stats/Kmeans/Kmeans.bundle cc -mmacosx-version-min=10.5 -bundle -undefined dynamic_lookup -Wl,-search_paths_first -arch i386 -arch x86_64 -Wl,-syslibroot,/Developer/SDKs/MacOSX10.6.sdk -mmacosx-version-min=10.6 -fstack-protector Kmeans.o -o ../blib/arch/auto/PDL/Stats/Kmeans/Kmeans.bundle \ \ chmod 755 ../blib/arch/auto/PDL/Stats/Kmeans/Kmeans.bundle cp Kmeans.bs ../blib/arch/auto/PDL/Stats/Kmeans/Kmeans.bs chmod 644 ../blib/arch/auto/PDL/Stats/Kmeans/Kmeans.bs Manifying ../blib/man3/PDL::Stats::Kmeans.3 **** no GSL lib, skip PDL::GSL::CDF **** /Users/fly1600/ap1600/bin/perl-dynamic -I/Users/fly1600/var/megalib "-MPDL::PP qw/PDL::Stats::TS PDL::Stats::TS TS/" ts.pp cp TS.pm ../blib/lib/PDL/Stats/TS.pm /Users/fly1600/ap1600/bin/perl-dynamic /Users/fly1600/var/megalib/ExtUtils/xsubpp -typemap /Users/fly1600/ap1600/lib/ExtUtils/typemap -typemap /Users/fly1600/var/megalib/PDL/Core/typemap.pdl TS.xs > TS.xsc && mv TS.xsc TS.c gcc -c -I/Users/fly1600/var/megalib/PDL/Core -fno-common -DPERL_DARWIN -no-cpp-precomp -arch i386 -arch x86_64 -nostdinc -B/Developer/SDKs/MacOSX10.6.sdk/usr/include/gcc -B/Developer/SDKs/MacOSX10.6.sdk/usr/lib/gcc -isystem/Developer/SDKs/MacOSX10.6.sdk/usr/include -F/Developer/SDKs/MacOSX10.6.sdk/System/Library/Frameworks -mmacosx-version-min=10.6 -DUSE_SITECUSTOMIZE -DPERL_RELOCATABLE_INCPUSH -fno-merge-constants -fno-strict-aliasing -pipe -fstack-protector -O3 -DVERSION=\"\" -DXS_VERSION=\"\" "-I/Users/fly1600/ap1600/lib/CORE" TS.c Running Mkbootstrap for PDL::Stats::TS () chmod 644 TS.bs rm -f ../blib/arch/auto/PDL/Stats/TS/TS.bundle cc -mmacosx-version-min=10.5 -bundle -undefined dynamic_lookup -Wl,-search_paths_first -arch i386 -arch x86_64 -Wl,-syslibroot,/Developer/SDKs/MacOSX10.6.sdk -mmacosx-version-min=10.6 -fstack-protector TS.o -o ../blib/arch/auto/PDL/Stats/TS/TS.bundle \ \ chmod 755 ../blib/arch/auto/PDL/Stats/TS/TS.bundle cp TS.bs ../blib/arch/auto/PDL/Stats/TS/TS.bs chmod 644 ../blib/arch/auto/PDL/Stats/TS/TS.bs Manifying ../blib/man3/PDL::Stats::TS.3 Manifying blib/man3/PDL::Stats.3 MAGGIEXYZ/PDL-Stats-0.6.4.tar.gz make -- OK Running make test >>> make test TEST_VERBOSE=1 **** no GSL lib, skip PDL::Stats::Distr **** **** no GSL lib, skip PDL::GSL::CDF **** PERL_DL_NONLAZY=1 /Users/fly1600/ap1600/bin/perl-dynamic "-MExtUtils::Command::MM" "-e" "test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/stats_basic.t ..... ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 - cov ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 - rtable data dim ok 44 - rtable bad elem ok 45 - cov_table ok 46 - cov_table bad val ok 47 ok 48 ok 49 ok 50 # skip no PDL::GSL::CDF ok 51 - group_by single factor equal n ok 52 - group_by single factor label ok 53 - group_by single factor unequal n ok 54 - group_by multiple factors ok 55 - group_by multiple factors label ok 56 - _array_to_pdl ok 57 - _array_to_pdl with missing value undef ok 58 - _array_to_pdl with missing value undef correctly coded ok 59 - _array_to_pdl with missing value BAD ok 60 - _array_to_pdl with missing value BAD correctly coded 1..60 ok No PDL::Slatec. Fall back on PDL::MatrixOps. 3 subjects with missing data removed t/stats_glm.t ....... ok 1 - use PDL::Stats::Basic; ok 2 - use PDL::Stats::GLM; ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 - ols_t R2 ok 15 - ols_t b ok 16 - ols_t, const=>0 ok 17 - ols ok 18 - ols with bad value didn't change caller value ok 19 - ols with bad value didn't remove caller bad flag ok 20 - ols with bad value ok 21 - r2_change ok 22 - eigenvalue ok 23 - loadings ok 24 - pct_var ok 25 - eigenvector ok 26 - corr=>0, eigenvalue ok 27 - corr=>0, loadings ok 28 - corr=>0, pct_var ok 29 - corr=>0, eigenvector ok 30 ok 31 # skip no PDL::Fit::LM ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 - effect_code got bad value ok 42 - effect_code coded with bad value ok 43 - effect_code_w ok 44 - anova_3w ok 45 - anova_1w ok 46 - anova_3w bad dv ok 47 - anova_3w bad dv iv ok 48 - fill_m nan to bad ok 49 - stddz nan vs bad ok 50 - anova_rptd_1w ok 51 - anova_rptd_2w bad dv ok 52 - anova_rptd_2w bad iv ok 53 - anova_rptd_3w ok 54 - anova_rptd mixed ok 55 - anova_rptd mixed bad ok 56 - anova_rptd_mixed_4w ok 57 - interaction_code 1..57 ok t/stats_kmeans.t .... ok 1 - use PDL::Stats::Basic; ok 2 - use PDL::Stats::Kmeans; ok 3 ok 4 - iv_cluster has bad value ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 - _d_point2line ok 20 - which_cluster 1..20 ok t/stats_ols_rptd.t .. 1..7 (ss_residual) 58.3754646504336 (ss_subject) 51.8590337714296 (ss_total) 405.18824177143 F [ 7.208473 61.354153 1.0243311] coeff [0.33337285 0.45858933 0.15162986] df [1 1 1] df_err [9 9 9] ms [ 18.450705 73.813294 0.57026483] ms_err [ 2.5595857 1.2030692 0.55671923] ss [ 18.450705 73.813294 0.57026483] ss_err [ 23.036272 10.827623 5.0104731] ok 1 - ss_total ok 2 - ss_residual ok 3 - ss_subject ok 4 - ss ok 5 - ss_err ok 6 - coeff ok 7 - F ok t/stats_ts.t ........ 1..23 ok 1 - use PDL::Stats::TS; ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 - season_m m ok 23 - season_m ms ok All tests successful. Files=5, Tests=167, 10 wallclock secs ( 0.06 usr 0.02 sys + 9.43 cusr 0.11 csys = 9.62 CPU) Result: PASS No tests defined for PDL::Stats::Basic extension. **** no GSL lib, skip PDL::Stats::Distr **** No tests defined for PDL::Stats::GLM extension. No tests defined for PDL::Stats::Kmeans extension. **** no GSL lib, skip PDL::GSL::CDF **** No tests defined for PDL::Stats::TS extension. MAGGIEXYZ/PDL-Stats-0.6.4.tar.gz make test TEST_VERBOSE=1 -- OK DISTNAME-VERSION 'PDL-Stats-v0.6.4' found in META.yml is bogus, ignoring at /Users/fly1600/lib/Fly/MakePPD.pm line 132. Maggie J. Xiong <maggiexyz@cpan.org> a collection of statistics modules in Perl Data Language, with a quick-start guide for non-PDL people. >>> (cd /Users/fly1600/var/cpan/build/PDL-Stats-0.6.4-Riamgg && tar cvf - PDL-Stats-0.6.4.ppd blib) | gzip -c >/Users/fly1600/var/REPO/M/MA/MAGGIEXYZ/PDL-Stats-0.6.4.tar.gz PDL-Stats-0.6.4.ppd blib/ blib/arch/ blib/arch/auto/ blib/arch/auto/PDL/ blib/arch/auto/PDL/Stats/ blib/arch/auto/PDL/Stats/Basic/ blib/arch/auto/PDL/Stats/Basic/Basic.bs blib/arch/auto/PDL/Stats/Basic/Basic.bundle blib/arch/auto/PDL/Stats/GLM/ blib/arch/auto/PDL/Stats/GLM/GLM.bs blib/arch/auto/PDL/Stats/GLM/GLM.bundle blib/arch/auto/PDL/Stats/Kmeans/ blib/arch/auto/PDL/Stats/Kmeans/Kmeans.bs blib/arch/auto/PDL/Stats/Kmeans/Kmeans.bundle blib/arch/auto/PDL/Stats/TS/ blib/arch/auto/PDL/Stats/TS/TS.bs blib/arch/auto/PDL/Stats/TS/TS.bundle blib/lib/ blib/lib/PDL/ blib/lib/PDL/add_doc.pl blib/lib/PDL/Stats/ blib/lib/PDL/Stats/Basic.pm blib/lib/PDL/Stats/GLM.pm blib/lib/PDL/Stats/Kmeans.pm blib/lib/PDL/Stats/TS.pm blib/lib/PDL/Stats.pm blib/man3/ blib/man3/PDL::Stats.3 blib/man3/PDL::Stats::Basic.3 blib/man3/PDL::Stats::GLM.3 blib/man3/PDL::Stats::Kmeans.3 blib/man3/PDL::Stats::TS.3 >>> mv /Users/fly1600/var/cpan/build/PDL-Stats-0.6.4-Riamgg/PDL-Stats-0.6.4.ppd /Users/fly1600/var/REPO/M/MA/MAGGIEXYZ Finished 2013-09-06T03:09:15