PATH=/usr/bin:/bin:/Users/fly2400/cpanfly-5.24/var/megalib/bin Start 2018-03-08T02:01:16 ActivePerl-2400 CPAN-2.10 Reading '/Users/fly2400/cpanfly-5.24/var/cpan/Metadata' Database was generated on Wed, 07 Mar 2018 06:29:03 GMT Checksum for /Users/fly2400/cpanfly-5.24/var/cpan/sources/authors/id/K/KI/KIWIROY/tmp/Alien-KentSrc-0.3.tar.gz ok Alien-KentSrc-0.3/ Alien-KentSrc-0.3/cpanfile Alien-KentSrc-0.3/Changes Alien-KentSrc-0.3/MANIFEST Alien-KentSrc-0.3/t/ Alien-KentSrc-0.3/t/00-basic.t Alien-KentSrc-0.3/t/02-files.t Alien-KentSrc-0.3/t/01-compile.t Alien-KentSrc-0.3/README Alien-KentSrc-0.3/META.yml Alien-KentSrc-0.3/lib/ Alien-KentSrc-0.3/lib/Alien/ Alien-KentSrc-0.3/lib/Alien/KentSrc.pm Alien-KentSrc-0.3/Makefile.PL Alien-KentSrc-0.3/META.json Alien-KentSrc-0.3/alienfile ---- Unsatisfied dependencies detected during ---- ---- KIWIROY/tmp/Alien-KentSrc-0.3.tar.gz ---- Alien::Build [build_requires] Running test for module 'Alien::Build' Checksum for /Users/fly2400/cpanfly-5.24/var/cpan/sources/authors/id/P/PL/PLICEASE/Alien-Build-1.37.tar.gz ok Alien-Build-1.37 Alien-Build-1.37/README Alien-Build-1.37/Changes Alien-Build-1.37/SUPPORT Alien-Build-1.37/LICENSE Alien-Build-1.37/INSTALL Alien-Build-1.37/dist.ini Alien-Build-1.37/META.yml Alien-Build-1.37/MANIFEST Alien-Build-1.37/META.json Alien-Build-1.37/author.yml Alien-Build-1.37/t Alien-Build-1.37/t/01_use.t Alien-Build-1.37/t/bin Alien-Build-1.37/t/bin/ftpd Alien-Build-1.37/t/00_diag.t Alien-Build-1.37/t/bin/httpd Alien-Build-1.37/Makefile.PL Alien-Build-1.37/maint Alien-Build-1.37/maint/gen.pl Alien-Build-1.37/t/alienfile.t Alien-Build-1.37/example Alien-Build-1.37/example/README Alien-Build-1.37/t/alien_base.t Alien-Build-1.37/t/alien_role.t Alien-Build-1.37/t/test_alien.t Alien-Build-1.37/t/alien_build.t Alien-Build-1.37/xt/author Alien-Build-1.37/xt/author/eol.t Alien-Build-1.37/xt/author/pod.t Alien-Build-1.37/lib Alien-Build-1.37/lib/alienfile.pm Alien-Build-1.37/lib/Alien 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Alien-Build-1.37/lib/Alien/Build/Plugin/Extract/CommandLine.pm Alien-Build-1.37/lib/Alien/Build/Plugin/PkgConfig/Negotiate.pm Alien-Build-1.37/lib/Alien/Build/Plugin/Prefer/SortVersions.pm Alien-Build-1.37/corpus/cmake-libpalindrome/palx/CMakeLists.txt Alien-Build-1.37/lib/Alien/Build/Plugin/PkgConfig/LibPkgConf.pm Alien-Build-1.37/lib/Alien/Build/Plugin/PkgConfig/MakeStatic.pm Alien-Build-1.37/lib/Alien/Build/Plugin/Gather Alien-Build-1.37/lib/Alien/Build/Plugin/Gather/IsolateDynamic.pm Alien-Build-1.37/lib/Alien/Build/Plugin/PkgConfig/CommandLine.pm Alien-Build-1.37/t/alien_build_plugin_decode_dirlistingftpcopy.t Alien-Build-1.37/t/alien_build_plugin_pkgconfig_negotiate__pick.t Alien-Build-1.37/lib/Alien/Build/Plugin/Decode/DirListingFtpcopy.pm Alien-Build-1.37/corpus/alien_build_plugin_fetch_wget/record Alien-Build-1.37/corpus/alien_build_plugin_fetch_wget/record/old.yml Alien-Build-1.37/corpus/lib/auto/share/dist/Alien-Foo2/lib Alien-Build-1.37/corpus/lib/auto/share/dist/Alien-Foo2/lib/libfoo2.a Alien-Build-1.37/t/alien_build_plugin_extract_commandline__tar_can.t Alien-Build-1.37/corpus/alien_build_plugin_fetch_wget/record/old.json Alien-Build-1.37/corpus/alien_build_plugin_fetch_wget/dir Alien-Build-1.37/corpus/alien_build_plugin_fetch_wget/dir/foo-1.00.tar Alien-Build-1.37/corpus/alien_build_plugin_fetch_wget/dir/foo-1.01.tar Alien-Build-1.37/corpus/alien_build_plugin_fetch_wget/dir/foo-1.02.tar Alien-Build-1.37/corpus/cmake-libpalindrome/libpalindrome Alien-Build-1.37/corpus/cmake-libpalindrome/libpalindrome/palindrome.c Alien-Build-1.37/corpus/lib/auto/share/dist/Alien-libfoo2/lib Alien-Build-1.37/corpus/lib/auto/share/dist/Alien-libfoo2/lib/libfoo.a Alien-Build-1.37/corpus/lib/auto/share/dist/Alien-libfoo2/include Alien-Build-1.37/corpus/lib/auto/share/dist/Alien-libfoo2/include/foo.h Alien-Build-1.37/corpus/alien_build_plugin_fetch_wget/dir/html_test.html Alien-Build-1.37/corpus/cmake-libpalindrome/libpalindrome/CMakeLists.txt Alien-Build-1.37/corpus/lib/Alien/Build/Plugin/NesAdvantage Alien-Build-1.37/corpus/lib/Alien/Build/Plugin/NesAdvantage/Negotiate.pm Alien-Build-1.37/corpus/lib/auto/share/dist/Alien-libfoo2/bin Alien-Build-1.37/corpus/lib/auto/share/dist/Alien-libfoo2/bin/foo-config Alien-Build-1.37/corpus/cmake-libpalindrome/libpalindrome/libpalindrome.h Alien-Build-1.37/corpus/lib/Alien/Build/Plugin/NesAdvantage/Controller.pm Alien-Build-1.37/corpus/alien_build_plugin_fetch_curlcommand/record Alien-Build-1.37/corpus/alien_build_plugin_fetch_curlcommand/record/old.yml Alien-Build-1.37/corpus/lib/auto/share/dist/Alien-libfoo1/_alien Alien-Build-1.37/corpus/lib/auto/share/dist/Alien-libfoo1/_alien/alien.json Alien-Build-1.37/corpus/lib/auto/share/dist/Alien-libfoo2/_alien Alien-Build-1.37/corpus/lib/auto/share/dist/Alien-libfoo2/_alien/alien.json Alien-Build-1.37/corpus/lib/auto/share/dist/Alien-libfoo2/dynamic Alien-Build-1.37/corpus/lib/auto/share/dist/Alien-libfoo2/dynamic/libfoo.so Alien-Build-1.37/corpus/alien_build_plugin_fetch_curlcommand/record/old.json Alien-Build-1.37/corpus/lib/auto/share/dist/Alien-libfoo1/_alien/for_libfoo1 Alien-Build-1.37/corpus/lib/auto/share/dist/Alien-libfoo2/_alien/for_libfoo2 Alien-Build-1.37/corpus/alien_build_plugin_fetch_curlcommand/dir Alien-Build-1.37/corpus/alien_build_plugin_fetch_curlcommand/dir/foo-1.00.tar Alien-Build-1.37/corpus/alien_build_plugin_fetch_curlcommand/dir/foo-1.01.tar Alien-Build-1.37/corpus/alien_build_plugin_fetch_curlcommand/dir/foo-1.02.tar Alien-Build-1.37/corpus/lib/auto/share/dist/Alien-libfoo2/dynamic/libfoo.so.2 Alien-Build-1.37/corpus/lib/auto/share/dist/Alien-libfoo2/lib/pkgconfig Alien-Build-1.37/corpus/lib/auto/share/dist/Alien-libfoo2/lib/pkgconfig/x1.pc Alien-Build-1.37/corpus/alien_build_plugin_fetch_curlcommand/dir/html_test.html Alien-Build-1.37/corpus/lib/auto/share/dist/Alien-libfoo2/share/pkgconfig Alien-Build-1.37/corpus/lib/auto/share/dist/Alien-libfoo2/share/pkgconfig/x2.pc Alien-Build-1.37/corpus/lib/auto/share/dist/Alien-Foo2/lib/libfoo2-3.2.1/include Alien-Build-1.37/corpus/lib/auto/share/dist/Alien-Foo2/lib/libfoo2-3.2.1/include/foo2.h Configuring P/PL/PLICEASE/Alien-Build-1.37.tar.gz with Makefile.PL >>> /Users/fly2400/ap2400-300558/bin/perl-dynamic Makefile.PL Checking if your kit is complete... Looks good Have /Users/fly2400/cpanfly-5.24/var/megalib Want /Users/fly2400/ap2400-300558/lib Your perl and your Config.pm seem to have different ideas about the architecture they are running on. Perl thinks: [megalib] Config says: [darwin-thread-multi-2level] This may or may not cause problems. Please check your installation of perl if you have problems building this extension. Generating a Unix-style Makefile Writing Makefile for Alien::Build Writing MYMETA.yml and MYMETA.json PLICEASE/Alien-Build-1.37.tar.gz /Users/fly2400/ap2400-300558/bin/perl-dynamic Makefile.PL -- OK Running make for P/PL/PLICEASE/Alien-Build-1.37.tar.gz >>> make cp lib/Test/Alien/Build.pm blib/lib/Test/Alien/Build.pm cp lib/Alien/Base/FAQ.pod blib/lib/Alien/Base/FAQ.pod cp lib/Alien/Build/Plugin/Decode/HTML.pm blib/lib/Alien/Build/Plugin/Decode/HTML.pm cp lib/Alien/Build/Plugin/PkgConfig/CommandLine.pm blib/lib/Alien/Build/Plugin/PkgConfig/CommandLine.pm cp lib/Alien/Build/Plugin/Core/Legacy.pm blib/lib/Alien/Build/Plugin/Core/Legacy.pm cp lib/Alien/Build/Plugin/Build.pod blib/lib/Alien/Build/Plugin/Build.pod cp lib/Alien/Build/Plugin/Fetch/LocalDir.pm blib/lib/Alien/Build/Plugin/Fetch/LocalDir.pm cp lib/Alien/Build/Plugin/Download.pod blib/lib/Alien/Build/Plugin/Download.pod cp lib/Alien/Build/Plugin/Build/Make.pm blib/lib/Alien/Build/Plugin/Build/Make.pm cp lib/Alien/Build/MM.pm blib/lib/Alien/Build/MM.pm cp lib/Alien/Build/Manual/Contributing.pod blib/lib/Alien/Build/Manual/Contributing.pod cp lib/Alien/Build/Plugin/Decode/DirListingFtpcopy.pm blib/lib/Alien/Build/Plugin/Decode/DirListingFtpcopy.pm cp lib/Alien/Build/Manual/AlienUser.pod blib/lib/Alien/Build/Manual/AlienUser.pod cp lib/Alien/Build/Plugin/Core/Tail.pm blib/lib/Alien/Build/Plugin/Core/Tail.pm cp lib/Alien/Build/Plugin/Probe/CommandLine.pm blib/lib/Alien/Build/Plugin/Probe/CommandLine.pm cp lib/Alien/Build/Plugin/Extract/CommandLine.pm blib/lib/Alien/Build/Plugin/Extract/CommandLine.pm cp lib/Alien/Build/Plugin/Extract/Negotiate.pm blib/lib/Alien/Build/Plugin/Extract/Negotiate.pm cp lib/Test/Alien/Run.pm blib/lib/Test/Alien/Run.pm cp lib/Alien/Build/Plugin/Fetch/Local.pm blib/lib/Alien/Build/Plugin/Fetch/Local.pm cp lib/Alien/Build/Plugin/PkgConfig/Negotiate.pm blib/lib/Alien/Build/Plugin/PkgConfig/Negotiate.pm cp lib/Alien/Build/Plugin/Build/SearchDep.pm blib/lib/Alien/Build/Plugin/Build/SearchDep.pm cp lib/Alien/Build/Plugin/Prefer/BadVersion.pm blib/lib/Alien/Build/Plugin/Prefer/BadVersion.pm cp lib/Alien/Build/Plugin/Decode/DirListing.pm blib/lib/Alien/Build/Plugin/Decode/DirListing.pm cp lib/Alien/Base/PkgConfig.pm blib/lib/Alien/Base/PkgConfig.pm cp lib/Alien/Build/Plugin/Core.pod blib/lib/Alien/Build/Plugin/Core.pod cp lib/Alien/Build/Plugin/PkgConfig/MakeStatic.pm blib/lib/Alien/Build/Plugin/PkgConfig/MakeStatic.pm cp lib/Alien/Build/Plugin/Download/Negotiate.pm blib/lib/Alien/Build/Plugin/Download/Negotiate.pm cp lib/Alien/Base.pm blib/lib/Alien/Base.pm cp lib/Alien/Build/Plugin/Build/Autoconf.pm blib/lib/Alien/Build/Plugin/Build/Autoconf.pm cp lib/Alien/Build/Plugin.pm blib/lib/Alien/Build/Plugin.pm cp lib/Alien/Build/Interpolate/Default.pm blib/lib/Alien/Build/Interpolate/Default.pm cp lib/Alien/Build/Plugin/Extract/ArchiveTar.pm blib/lib/Alien/Build/Plugin/Extract/ArchiveTar.pm cp lib/alienfile.pm blib/lib/alienfile.pm cp lib/Alien/Build/Plugin/Prefer/SortVersions.pm blib/lib/Alien/Build/Plugin/Prefer/SortVersions.pm cp lib/Alien/Build/Manual/FAQ.pod blib/lib/Alien/Build/Manual/FAQ.pod cp lib/Alien/Build/Plugin/Build/CMake.pm blib/lib/Alien/Build/Plugin/Build/CMake.pm cp lib/Alien/Build/Plugin/Core/FFI.pm blib/lib/Alien/Build/Plugin/Core/FFI.pm cp lib/Alien/Build/Plugin/Extract/ArchiveZip.pm blib/lib/Alien/Build/Plugin/Extract/ArchiveZip.pm cp lib/Alien/Base/Wrapper.pm blib/lib/Alien/Base/Wrapper.pm cp lib/Alien/Build/Manual/AlienAuthor.pod blib/lib/Alien/Build/Manual/AlienAuthor.pod cp lib/Test/Alien.pm blib/lib/Test/Alien.pm cp lib/Alien/Build/Plugin/Core/Override.pm blib/lib/Alien/Build/Plugin/Core/Override.pm cp lib/Test/Alien/CanCompile.pm blib/lib/Test/Alien/CanCompile.pm cp lib/Alien/Build/Plugin/Core/Download.pm blib/lib/Alien/Build/Plugin/Core/Download.pm cp lib/Alien/Build/Plugin/Prefer.pod blib/lib/Alien/Build/Plugin/Prefer.pod cp lib/Alien/Build/Plugin/Fetch/HTTPTiny.pm blib/lib/Alien/Build/Plugin/Fetch/HTTPTiny.pm cp lib/Alien/Build/Plugin/Fetch/NetFTP.pm blib/lib/Alien/Build/Plugin/Fetch/NetFTP.pm cp lib/Test/Alien/Synthetic.pm blib/lib/Test/Alien/Synthetic.pm cp lib/Alien/Build/Plugin/Core/Gather.pm blib/lib/Alien/Build/Plugin/Core/Gather.pm cp lib/Alien/Build/CommandSequence.pm blib/lib/Alien/Build/CommandSequence.pm cp lib/Alien/Build/Plugin/Build/MSYS.pm blib/lib/Alien/Build/Plugin/Build/MSYS.pm cp lib/Test/Alien/CanPlatypus.pm blib/lib/Test/Alien/CanPlatypus.pm cp lib/Alien/Build/Plugin/Fetch.pod blib/lib/Alien/Build/Plugin/Fetch.pod cp lib/Alien/Build/Plugin/PkgConfig/LibPkgConf.pm blib/lib/Alien/Build/Plugin/PkgConfig/LibPkgConf.pm cp lib/Alien/Base/Authoring.pod blib/lib/Alien/Base/Authoring.pod cp lib/Alien/Build/Plugin/Probe/CBuilder.pm blib/lib/Alien/Build/Plugin/Probe/CBuilder.pm cp lib/Alien/Build/Plugin/Probe.pod blib/lib/Alien/Build/Plugin/Probe.pod cp lib/Alien/Build/Plugin/Gather/IsolateDynamic.pm blib/lib/Alien/Build/Plugin/Gather/IsolateDynamic.pm cp lib/Alien/Build/Interpolate.pm blib/lib/Alien/Build/Interpolate.pm cp lib/Alien/Build/Plugin/Decode.pod blib/lib/Alien/Build/Plugin/Decode.pod cp lib/Alien/Build/Plugin/Fetch/CurlCommand.pm blib/lib/Alien/Build/Plugin/Fetch/CurlCommand.pm cp lib/Alien/Build/Plugin/Core/Setup.pm blib/lib/Alien/Build/Plugin/Core/Setup.pm cp lib/Alien/Role.pm blib/lib/Alien/Role.pm cp lib/Alien/Build/Util.pm blib/lib/Alien/Build/Util.pm cp lib/Alien/Build/Plugin/Fetch/LWP.pm blib/lib/Alien/Build/Plugin/Fetch/LWP.pm cp lib/Alien/Build/Version/Basic.pm blib/lib/Alien/Build/Version/Basic.pm cp lib/Alien/Build/Manual/PluginAuthor.pod blib/lib/Alien/Build/Manual/PluginAuthor.pod cp lib/Alien/Build/Plugin/Extract.pod blib/lib/Alien/Build/Plugin/Extract.pod cp lib/Alien/Build/Plugin/PkgConfig/PP.pm blib/lib/Alien/Build/Plugin/PkgConfig/PP.pm cp lib/Alien/Build/Plugin/Extract/Directory.pm blib/lib/Alien/Build/Plugin/Extract/Directory.pm cp lib/Alien/Build.pm blib/lib/Alien/Build.pm cp lib/Alien/Build/Plugin/Fetch/Wget.pm blib/lib/Alien/Build/Plugin/Fetch/Wget.pm Manifying 72 pod documents PLICEASE/Alien-Build-1.37.tar.gz make -- OK Running make test >>> make test TEST_VERBOSE=1 PERL_DL_NONLAZY=1 "/Users/fly2400/ap2400-300558/bin/perl-dynamic" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t # # # # ACTIVEPERL_CONFIG_DISABLE=1 # HARNESS_ACTIVE=1 # HARNESS_IS_VERBOSE=1 # HARNESS_VERSION=3.36 # PERL5LIB=/Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib:/Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/arch:/Users/fly2400/cpanfly-5.24/var/megalib:/Users/fly2400/cpanfly-5.24/var/megalib # PERL5OPT= # PERL5_CPANPLUS_IS_RUNNING=51636 # PERL5_CPAN_IS_RUNNING=51636 # PERL5_CPAN_IS_RUNNING_IN_RECURSION=50759,51636 # PERL_DL_NONLAZY=1 # PERL_MM_USE_DEFAULT=1 # SHELL=/bin/sh # # # # PERL5LIB path # /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib # /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/arch # /Users/fly2400/cpanfly-5.24/var/megalib # /Users/fly2400/cpanfly-5.24/var/megalib # # # # perl 5.024000 # Acme::Alien::DontPanic 0.044 # Alien::Base::ModuleBuild 1.00 # Alien::Libbz2 - # Alien::cmake3 - # Alien::gzip 0.05 # Alien::xz 0.07 # Archive::Tar 2.26 # Archive::Zip 1.60 # Capture::Tiny 0.46 # Devel::Hide 0.0009 # ExtUtils::CBuilder 0.280225 # ExtUtils::MakeMaker 7.16 # ExtUtils::ParseXS 3.35 # FFI::CheckLib 0.18 # FFI::Platypus 0.42 # File::Listing 6.04 # File::Listing::Ftpcopy 0.08 # File::Which 1.22 # File::chdir 0.1010 # HTML::LinkExtor 3.69 # HTTP::Tiny 0.070 # IO::Compress::Bzip2 2.074 # IO::Socket::SSL 2.056 # IO::Uncompress::Bunzip2 2.074 # IO::Zlib 1.10 # JSON::PP 2.97001 # LWP 6.33 # LWP::Protocol::https 6.07 # Module::Load 0.32 # Net::FTP 3.11 # Net::SSLeay 1.84 # Path::Tiny 0.104 # PkgConfig 0.19026 # PkgConfig::LibPkgConf 0.07 # Readonly 2.05 # Sort::Versions 1.62 # Test2::API 1.302128 # Test2::Mock 0.000084 # Test2::Require 0.000084 # Test2::Require::Module 0.000084 # Test2::V0 0.000084 # Text::ParseWords 3.30 # URI 1.73 # YAML 1.24 # # # # --- # cmake_generator: Unix Makefiles # compiler_type: unix # pkg-config: # pkg-config: ~ # pkgconf: ~ # system_type: unix # # # t/00_diag.t .......................................... ok 1 - okay 1..1 ok t/01_use.t ........................................... ok 1 - require Alien::Base ok 2 - require Alien::Base::PkgConfig ok 3 - require Alien::Base::Wrapper ok 4 - require Alien::Build ok 5 - require Alien::Build::CommandSequence ok 6 - require Alien::Build::Interpolate ok 7 - require Alien::Build::Interpolate::Default ok 8 - require Alien::Build::MM ok 9 - require Alien::Build::Plugin ok 10 - require Alien::Build::Plugin::Build::Autoconf ok 11 - require Alien::Build::Plugin::Build::CMake ok 12 - require Alien::Build::Plugin::Build::MSYS ok 13 - require Alien::Build::Plugin::Build::Make ok 14 - require Alien::Build::Plugin::Build::SearchDep ok 15 - require Alien::Build::Plugin::Core::Download ok 16 - require Alien::Build::Plugin::Core::FFI ok 17 - require Alien::Build::Plugin::Core::Gather ok 18 - require Alien::Build::Plugin::Core::Legacy ok 19 - require Alien::Build::Plugin::Core::Override ok 20 - require Alien::Build::Plugin::Core::Setup ok 21 - require Alien::Build::Plugin::Core::Tail ok 22 - require Alien::Build::Plugin::Decode::DirListing ok 23 - require Alien::Build::Plugin::Decode::DirListingFtpcopy ok 24 - require Alien::Build::Plugin::Decode::HTML ok 25 - require Alien::Build::Plugin::Download::Negotiate ok 26 - require Alien::Build::Plugin::Extract::ArchiveTar ok 27 - require Alien::Build::Plugin::Extract::ArchiveZip ok 28 - require Alien::Build::Plugin::Extract::CommandLine ok 29 - require Alien::Build::Plugin::Extract::Directory ok 30 - require Alien::Build::Plugin::Extract::Negotiate ok 31 - require Alien::Build::Plugin::Fetch::CurlCommand ok 32 - require Alien::Build::Plugin::Fetch::HTTPTiny ok 33 - require Alien::Build::Plugin::Fetch::LWP ok 34 - require Alien::Build::Plugin::Fetch::Local ok 35 - require Alien::Build::Plugin::Fetch::LocalDir ok 36 - require Alien::Build::Plugin::Fetch::NetFTP ok 37 - require Alien::Build::Plugin::Fetch::Wget ok 38 - require Alien::Build::Plugin::Gather::IsolateDynamic ok 39 - require Alien::Build::Plugin::PkgConfig::CommandLine ok 40 - require Alien::Build::Plugin::PkgConfig::LibPkgConf ok 41 - require Alien::Build::Plugin::PkgConfig::MakeStatic ok 42 - require Alien::Build::Plugin::PkgConfig::Negotiate ok 43 - require Alien::Build::Plugin::PkgConfig::PP ok 44 - require Alien::Build::Plugin::Prefer::BadVersion ok 45 - require Alien::Build::Plugin::Prefer::SortVersions ok 46 - require Alien::Build::Plugin::Probe::CBuilder ok 47 - require Alien::Build::Plugin::Probe::CommandLine ok 48 - require Alien::Build::Util ok 49 - require Alien::Build::Version::Basic ok 50 - require Alien::Role ok 51 - require Test::Alien ok 52 - require Test::Alien::Build ok 53 - require Test::Alien::CanCompile ok 54 - require Test::Alien::CanPlatypus ok 55 - require Test::Alien::Run ok 56 - require Test::Alien::Synthetic ok 57 - require alienfile ok 58 - test for Alien::Base ok 59 - test for Alien::Base::PkgConfig ok 60 - test for Alien::Base::Wrapper ok 61 - test for Alien::Build ok 62 - test for Alien::Build::CommandSequence ok 63 - test for Alien::Build::Interpolate ok 64 - test for Alien::Build::Interpolate::Default ok 65 - test for Alien::Build::MM ok 66 - test for Alien::Build::Plugin ok 67 - test for Alien::Build::Plugin::Build::Autoconf ok 68 - test for Alien::Build::Plugin::Build::CMake ok 69 - test for Alien::Build::Plugin::Build::MSYS ok 70 - test for Alien::Build::Plugin::Build::Make ok 71 - test for Alien::Build::Plugin::Build::SearchDep ok 72 - test for Alien::Build::Plugin::Core::Download ok 73 - test for Alien::Build::Plugin::Core::FFI ok 74 - test for Alien::Build::Plugin::Core::Gather ok 75 - test for Alien::Build::Plugin::Core::Legacy ok 76 - test for Alien::Build::Plugin::Core::Override ok 77 - test for Alien::Build::Plugin::Core::Setup ok 78 - test for Alien::Build::Plugin::Core::Tail ok 79 - test for Alien::Build::Plugin::Decode::DirListing ok 80 - test for Alien::Build::Plugin::Decode::DirListingFtpcopy ok 81 - test for Alien::Build::Plugin::Decode::HTML ok 82 - test for Alien::Build::Plugin::Download::Negotiate ok 83 - test for Alien::Build::Plugin::Extract::ArchiveTar ok 84 - test for Alien::Build::Plugin::Extract::ArchiveZip ok 85 - test for Alien::Build::Plugin::Extract::CommandLine ok 86 - test for Alien::Build::Plugin::Extract::Directory ok 87 - test for Alien::Build::Plugin::Extract::Negotiate ok 88 - test for Alien::Build::Plugin::Fetch::CurlCommand ok 89 - test for Alien::Build::Plugin::Fetch::HTTPTiny ok 90 - test for Alien::Build::Plugin::Fetch::LWP ok 91 - test for Alien::Build::Plugin::Fetch::Local ok 92 - test for Alien::Build::Plugin::Fetch::LocalDir ok 93 - test for Alien::Build::Plugin::Fetch::NetFTP ok 94 - test for Alien::Build::Plugin::Fetch::Wget ok 95 - test for Alien::Build::Plugin::Gather::IsolateDynamic ok 96 - test for Alien::Build::Plugin::PkgConfig::CommandLine ok 97 - test for Alien::Build::Plugin::PkgConfig::LibPkgConf ok 98 - test for Alien::Build::Plugin::PkgConfig::MakeStatic ok 99 - test for Alien::Build::Plugin::PkgConfig::Negotiate ok 100 - test for Alien::Build::Plugin::PkgConfig::PP ok 101 - test for Alien::Build::Plugin::Prefer::BadVersion ok 102 - test for Alien::Build::Plugin::Prefer::SortVersions ok 103 - test for Alien::Build::Plugin::Probe::CBuilder ok 104 - test for Alien::Build::Plugin::Probe::CommandLine ok 105 - test for Alien::Build::Util ok 106 - test for Alien::Build::Version::Basic ok 107 - test for Alien::Role ok 108 - test for Test::Alien ok 109 - test for Test::Alien::Build ok 110 - test for Test::Alien::CanCompile ok 111 - test for Test::Alien::CanPlatypus ok 112 - test for Test::Alien::Run ok 113 - test for Test::Alien::Synthetic ok 114 - test for alienfile 1..114 ok t/alien_base.t ....................................... ok 1 - AB::MB sys install { ok 1 - cflags: -DFOO=stuff ok 2 - libs: -lfoo1 ok 3 - version: 3.99999 1..3 } ok 2 - AB::MB share install { ok 1 - cflags: -I/Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/lib/auto/share/dist/Alien-Foo2/lib/libfoo2-3.2.1/include ok 2 - libs: -L/Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/lib/auto/share/dist/Alien-Foo2/lib/../lib -lfoo2 ok 3 - version: 3.2.1 ok 4 - include path # include path: /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/lib/auto/share/dist/Alien-Foo2/lib/libfoo2-3.2.1/include ok 5 - lib path # lib path: /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/lib/auto/share/dist/Alien-Foo2/lib/../lib 1..5 } ok 3 - Alien::Build system { ok 1 - dist_dir ok 2 - cflags ok 3 - cflags_static ok 4 - libs ok 5 - libs_static ok 6 - version ok 7 - install type { ok 1 ok 2 ok 3 1..3 } ok 8 - config.name ok 9 - config.finished_installing ok 10 - dynamic_libs ok 11 - bin_dir ok 12 - runtime_prop 1..12 } ok 4 - Alien::Build share { ok 1 - dist_dir ok 2 - cflags { ok 1 - cflags ok 2 - -I directory points to foo.h location ok 3 - cflags_static ok 4 - -I directory points to foo.h location (static) 1..4 } ok 3 - libs { ok 1 - libs ok 2 - -L directory points to libfoo.a location ok 3 - libs_static ok 4 - -L directory points to libfoo.a location (static) 1..4 } ok 4 - version ok 5 - install type { ok 1 ok 2 ok 3 1..3 } ok 6 - config.name ok 7 - config.finished_installing ok 8 - dynamic_libs ok 9 - bin_dir ok 10 - has a foo-config ok 11 - runtime_prop 1..11 } ok 5 - build flags { ok 1 - unix { ok 1 1..1 } ok 2 - windows { ok 1 ok 2 ok 3 1..3 } 1..2 } ok 6 - ffi_name { ok 1 - call dynamic_libs ok 2 ok 3 - call dynamic_libs ok 4 1..4 } 1..6 ok t/alien_base__system_installed.t ..................... ok 1 - basic { # lib = libfoo # cflags = -I/opt/foo/bar/baz/include # libs = -L/opt/foo/bar/baz/lib -lfoo # + pkg-config --modversion libfoo # Building MyTest # + pkg-config --modversion libfoo ok 1 - MyTest=HASH->isa('MyTest') ok 2 - MyTest=HASH->isa('Alien::Base') # alien->cflags = -I/opt/foo/bar/baz/include # alien->libs = -L/opt/foo/bar/baz/lib -lfoo ok 3 - get cflags from system-installed library ok 4 - get libs from system-installed library # Cleaning up build files # Cleaning up configuration files 1..4 } 1..1 ok t/alien_base_pkgconfig.t ............................. ok 1 - basic { ok 1 - Test file found ok 2 - Alien::Base::PkgConfig=HASH->isa('Alien::Base::PkgConfig') ok 3 - pcfiledir is a directory ok 4 - pcfiledir contains test.pc ok 5 - read vars ok 6 - read keywords ok 7 - understands package name from file path ok 8 - var getter ok 9 - var setter ok 10 - abstract vars in terms of each other ok 11 - abstract simple ok 12 - abstract abstract 'nested' ok 13 - Simple keyword getter ok 14 - single interpolation keyword ok 15 - multiple interpolation keyword ok 16 - multiple interpolation keyword with override 1..16 } ok 2 - version { # + /Users/fly2400/ap2400-300558/bin/perl-dynamic /Users/fly2400/cpanfly-5.24/var/megalib/PkgConfig.pm --modversion apr-1 # + /Users/fly2400/ap2400-300558/bin/perl-dynamic /Users/fly2400/cpanfly-5.24/var/megalib/PkgConfig.pm --modversion siughspidghsp ok 1 - good { # + /Users/fly2400/ap2400-300558/bin/perl-dynamic /Users/fly2400/cpanfly-5.24/var/megalib/PkgConfig.pm --modversion apr-1 ok 1 - found installed library # lib is apr-1 1..1 } ok 2 - bad { # + /Users/fly2400/ap2400-300558/bin/perl-dynamic /Users/fly2400/cpanfly-5.24/var/megalib/PkgConfig.pm --modversion siughspidghsp ok 1 - returns false if not found 1..1 } 1..2 } 1..2 ok t/alien_base_wrapper.t ............................... ok 1 - export { ok 1 - can cc ok 2 - can ld 1..2 } ok 2 - system { ok 1 - cc ok 2 - ld 1..2 } ok 3 - share { ok 1 - cc ok 2 - ld 1..2 } ok 4 - share sans static { ok 1 - cc ok 2 - ld 1..2 } ok 5 - combine aliens { ok 1 - cc ok 2 - ld ok 3 - mm_args { # --- # DEFINE: -DFOO5=1 -DBAR5=1 # INC: -I/foo/include -I/bar/include # LDDLFLAGS: '-L/foo/lib -L/foo/lib --ld-foo --ld-bar -mmacosx-version-min=10.9 -bundle -undefined dynamic_lookup -Wl,-search_paths_first -arch x86_64 -fstack-protector' # LDFLAGS: '-L/foo/lib -L/foo/lib --ld-foo --ld-bar -mmacosx-version-min=10.9 -Wl,-search_paths_first -arch x86_64 -fstack-protector' # LIBS: # - -L/foo/lib -L/foo/lib -lfoo -lbar ok 1 1..1 } ok 4 - mb_args { # --- # config: # lddlflags: '-L/foo/lib -L/foo/lib --ld-foo --ld-bar -mmacosx-version-min=10.9 -bundle -undefined dynamic_lookup -Wl,-search_paths_first -arch x86_64 -fstack-protector' # ldflags: '-L/foo/lib -L/foo/lib --ld-foo --ld-bar -mmacosx-version-min=10.9 -Wl,-search_paths_first -arch x86_64 -fstack-protector' # extra_compiler_flags: -I/foo/include -I/bar/include -DFOO5=1 -DBAR5=1 # extra_linker_flags: -lfoo -lbar ok 1 1..1 } 1..4 } 1..5 ok t/alien_build.t ...................................... ok 1 - simple new { ok 1 - basic basic { ok 1 - MyBuild=HASH->isa('Alien::Build') ok 2 - Alien::Build::Meta=HASH->isa('Alien::Build::Meta') ok 3 - Alien::Build::Meta=HASH->isa('Alien::Build::Meta') # --- !!perl/hash:Alien::Build::Meta # around: {} # build_suffix: '' # class: MyBuild # filename: /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/t/alien_build.t # phase: any # prop: {} # require: # any: {} # share: {} # system: {} 1..3 } ok 2 - with meta_prop in new { # --- # ramjet: # - 1 # - 2 # - 3 # roger: 1 ok 1 - has argument properties 1..1 } 1..2 } ok 2 - from file { ok 1 - Alien::Build::Auto::Basic0=HASH->isa('Alien::Build') ok 2 - Alien::Build::Meta=HASH->isa('Alien::Build::Meta') # --- !!perl/hash:Alien::Build::Meta # around: # gather_ffi: !!perl/code '{ "DUMMY" }' # gather_share: !!perl/code '{ "DUMMY" }' # gather_system: !!perl/code '{ "DUMMY" }' # build_suffix: '' # class: Alien::Build::Auto::Basic0 # default_hook: # build_ffi: &1 !!perl/code '{ "DUMMY" }' # download: !!perl/code '{ "DUMMY" }' # gather_ffi: *1 # gather_share: &2 !!perl/code '{ "DUMMY" }' # gather_system: *2 # override: !!perl/code '{ "DUMMY" }' # filename: /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/basic/alienfile # phase: any # prop: # arch: 1 # destdir_ffi_filter: '^dynamic' # local_source: 0 # network: 1 # platform: # compiler_type: unix # system_type: unix # require: # any: # Foo: 1.00 # configure: # Early::Module: 1.234 # share: # Bar: 2.00 # system: # Baz: 3.00 ok 3 - any ok 4 - share ok 5 - system ok 6 - configure ok 7 - Alien::Build::Interpolate::Default=HASH->isa('Alien::Build::Interpolate::Default') 1..7 } ok 3 - invalid alienfile { ok 1 1..1 } ok 4 - load requires { ok 1 - basic { # --- !!perl/hash:Alien::Build::Meta # around: # gather_ffi: !!perl/code '{ "DUMMY" }' # gather_share: !!perl/code '{ "DUMMY" }' # gather_system: !!perl/code '{ "DUMMY" }' # build_suffix: '' # class: Alien::Build::Auto::Mmlbxc1 # default_hook: # build_ffi: &1 !!perl/code '{ "DUMMY" }' # download: !!perl/code '{ "DUMMY" }' # gather_ffi: *1 # gather_share: &2 !!perl/code '{ "DUMMY" }' # gather_system: *2 # override: !!perl/code '{ "DUMMY" }' # filename: /tmp/mmlbxYK_Wc/alienfile # phase: any # prop: # arch: 1 # destdir_ffi_filter: '^dynamic' # local_source: 0 # network: 1 # platform: # compiler_type: unix # system_type: unix # require: # any: {} # share: {} # system: {} ok 1 - empty loads okay ok 2 - have it okay ok 3 # inc=corpus/lib/Foo/Bar/Baz.pm ok 4 # error=Foo::Bar::Baz1 version 2.00 required--this is only version 1.23 at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build.pm line 316. 1..4 } 1..1 } ok 5 - hook { ok 1 - simple single working hook { ok 1 ok 2 ok 3 ok 4 ok 5 1..5 } ok 2 - single failing hook { ok 1 # error = throw exception at t/alien_build.t line 140. ok 2 1..2 } ok 3 - one fail, one okay { ok 1 ok 2 1..2 } ok 4 - invalid hook { ok 1 1..1 } ok 5 - command list hook { # Alien::Build::CommandSequence> + /Users/fly2400/ap2400-300558/bin/perl-dynamic -e print @ARGV hello world # hello world ok 1 1..1 } ok 6 - command with failure { # Alien::Build::CommandSequence> + /Users/fly2400/ap2400-300558/bin/perl-dynamic -e exit 1 # external command failed at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/CommandSequence.pm line 71. ok 1 1..1 } ok 7 - command with failure, followed by good command { # Alien::Build::CommandSequence> + /Users/fly2400/ap2400-300558/bin/perl-dynamic -e exit 1 # Alien::Build::CommandSequence> + /Users/fly2400/ap2400-300558/bin/perl-dynamic -e # 1 ok 1 1..1 } ok 8 - around hook { ok 1 - single wrapper { ok 1 - return value ok 2 - arguments 1..2 } ok 2 - double wrapper { ok 1 - return value ok 2 - arguments 1..2 } ok 3 - alter args { ok 1 ok 2 1..2 } 1..3 } 1..8 } ok 6 - probe { ok 1 - system { # dir = /private/tmp/ELo1LPhQ4n/root/probe_NNby ok 1 ok 2 1..2 } ok 2 - share { # dir = /private/tmp/ONBcpm0U1_/root/probe_ayMg ok 1 ok 2 1..2 } ok 3 - throw exception { # dir = /private/tmp/Ocsf4N3BcL/root/probe_3Ivq # Alien::Build> error in probe (will do a share install): error will robinson! at t/alien_build.t line 353. # Alien::Build> Don't panic, we will attempt a share build from source if possible. # Alien::Build> Do not file a bug unless you expected a system install to succeed. # share ok 1 ok 2 1..2 } 1..3 } ok 7 - gather system { # Alien::Build::Plugin::Core::Legacy> adding legacy hash to config # Alien::Build::Plugin::Core::Gather> mkdir -p /tmp/x9kfGp2whL/stage/_alien # Alien::Build::Auto::Blank6=HASH(0x7fcfab16a048) ok 1 - runtime props ok 2 - install props 1..2 } ok 8 - download { ok 1 - component { ok 1 - single download with file as content { # Alien::Build> error in probe (will do a share install): No hooks registered for probe at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build.pm line 397. # Alien::Build> Don't panic, we will attempt a share build from source if possible. # Alien::Build> Do not file a bug unless you expected a system install to succeed. # Alien::Build::Plugin::Core::Download> downloaded foo-1.00.tar.gz ok 1 - install props # build.install_prop.download=/tmp/GNGJNuvyEU/root/download_I74z/foo-1.00.tar.gz ok 2 - file matches 1..2 } ok 2 - single download with file as path { # Alien::Build> error in probe (will do a share install): No hooks registered for probe at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build.pm line 397. # Alien::Build> Don't panic, we will attempt a share build from source if possible. # Alien::Build> Do not file a bug unless you expected a system install to succeed. # Alien::Build::Plugin::Core::Download> downloaded foo-1.00.tar.gz ok 1 - install props # build.install_prop.download=/tmp/5IXlNhTrto/root/download_E57Z/foo-1.00.tar.gz ok 2 - file matches 1..2 } ok 3 - listing download with listing as list { # Alien::Build> error in probe (will do a share install): No hooks registered for probe at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build.pm line 397. # Alien::Build> Don't panic, we will attempt a share build from source if possible. # Alien::Build> Do not file a bug unless you expected a system install to succeed. # Alien::Build::Plugin::Core::Download> candidate *http://test1.test/foo/bar/baz/foo-1.00.tar.gz # Alien::Build::Plugin::Core::Download> candidate http://test1.test/foo/bar/baz/foo-0.99.tar.gz # Alien::Build::Plugin::Core::Download> candidate http://test1.test/foo/bar/baz/foo-0.98.tar.gz # Alien::Build::Plugin::Core::Download> candidate http://test1.test/foo/bar/baz/foo-0.97.tar.gz # Alien::Build::Plugin::Core::Download> candidate http://test1.test/foo/bar/baz/foo-0.96.tar.gz # Alien::Build::Plugin::Core::Download> candidate http://test1.test/foo/bar/baz/foo-0.95.tar.gz # Alien::Build::Plugin::Core::Download> candidate http://test1.test/foo/bar/baz/foo-0.94.tar.gz # Alien::Build::Plugin::Core::Download> candidate http://test1.test/foo/bar/baz/foo-0.93.tar.gz # Alien::Build::Plugin::Core::Download> candidate ... # Alien::Build::Plugin::Core::Download> downloaded foo-1.00.tar.gz ok 1 - install props # build.install_prop.download=/tmp/AnIs1QObWJ/root/download_BMpi/foo-1.00.tar.gz ok 2 - file matches 1..2 } ok 4 - listing download with listing as html { # Alien::Build> error in probe (will do a share install): No hooks registered for probe at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build.pm line 397. # Alien::Build> Don't panic, we will attempt a share build from source if possible. # Alien::Build> Do not file a bug unless you expected a system install to succeed. # Alien::Build::Plugin::Core::Download> decoding html # Alien::Build::Plugin::Core::Download> candidate *http://test1.test/foo/bar/baz/foo-1.00.tar.gz # Alien::Build::Plugin::Core::Download> candidate http://test1.test/foo/bar/baz/foo-0.99.tar.gz # Alien::Build::Plugin::Core::Download> candidate http://test1.test/foo/bar/baz/foo-0.98.tar.gz # Alien::Build::Plugin::Core::Download> candidate http://test1.test/foo/bar/baz/foo-0.97.tar.gz # Alien::Build::Plugin::Core::Download> candidate http://test1.test/foo/bar/baz/foo-0.96.tar.gz # Alien::Build::Plugin::Core::Download> candidate http://test1.test/foo/bar/baz/foo-0.95.tar.gz # Alien::Build::Plugin::Core::Download> candidate http://test1.test/foo/bar/baz/foo-0.94.tar.gz # Alien::Build::Plugin::Core::Download> candidate http://test1.test/foo/bar/baz/foo-0.93.tar.gz # Alien::Build::Plugin::Core::Download> candidate ... # Alien::Build::Plugin::Core::Download> downloaded foo-1.00.tar.gz ok 1 - install props # build.install_prop.download=/tmp/BS5cY9mBmw/root/download_25Bl/foo-1.00.tar.gz ok 2 - file matches 1..2 } ok 5 - listing download with listing as dir_listing { # Alien::Build> error in probe (will do a share install): No hooks registered for probe at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build.pm line 397. # Alien::Build> Don't panic, we will attempt a share build from source if possible. # Alien::Build> Do not file a bug unless you expected a system install to succeed. # Alien::Build::Plugin::Core::Download> decoding dir listing # Alien::Build::Plugin::Core::Download> candidate *http://test1.test/foo/bar/baz/foo-1.00.tar.gz # Alien::Build::Plugin::Core::Download> candidate http://test1.test/foo/bar/baz/foo-0.99.tar.gz # Alien::Build::Plugin::Core::Download> candidate http://test1.test/foo/bar/baz/foo-0.98.tar.gz # Alien::Build::Plugin::Core::Download> candidate http://test1.test/foo/bar/baz/foo-0.97.tar.gz # Alien::Build::Plugin::Core::Download> candidate http://test1.test/foo/bar/baz/foo-0.96.tar.gz # Alien::Build::Plugin::Core::Download> candidate http://test1.test/foo/bar/baz/foo-0.95.tar.gz # Alien::Build::Plugin::Core::Download> candidate http://test1.test/foo/bar/baz/foo-0.94.tar.gz # Alien::Build::Plugin::Core::Download> candidate http://test1.test/foo/bar/baz/foo-0.93.tar.gz # Alien::Build::Plugin::Core::Download> candidate ... # Alien::Build::Plugin::Core::Download> downloaded foo-1.00.tar.gz ok 1 - install props # build.install_prop.download=/tmp/VmAp8Rpf5b/root/download_J7Ao/foo-1.00.tar.gz ok 2 - file matches 1..2 } 1..5 } ok 2 - command single { # Alien::Build> error in probe (will do a share install): No hooks registered for probe at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build.pm line 397. # Alien::Build> Don't panic, we will attempt a share build from source if possible. # Alien::Build> Do not file a bug unless you expected a system install to succeed. # Alien::Build::CommandSequence> + wget http://test1.test/foo/bar/baz/foo-1.00.tar.gz # 200 found http://test1.test/foo/bar/baz/foo-1.00.tar.gz! # Alien::Build> single file, assuming archive ok 1 - install props # build.install_prop.download=/private/tmp/T8_PeXXh0e/root/download_jcdO/foo-1.00.tar.gz ok 2 - file matches 1..2 } ok 3 - command no file { # Alien::Build> error in probe (will do a share install): No hooks registered for probe at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build.pm line 397. # Alien::Build> Don't panic, we will attempt a share build from source if possible. # Alien::Build> Do not file a bug unless you expected a system install to succeed. # Alien::Build::CommandSequence> + true ok 1 - diagnostic failure 1..1 } ok 4 - command multiple files { # Alien::Build> error in probe (will do a share install): No hooks registered for probe at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build.pm line 397. # Alien::Build> Don't panic, we will attempt a share build from source if possible. # Alien::Build> Do not file a bug unless you expected a system install to succeed. # Alien::Build::CommandSequence> + explode # Alien::Build> multiple files, assuming directoryn ok 1 - install props ok 2 - dir exists ok 3 - file foo.txt exists ok 4 - file bar.txt exists ok 5 - file baz.txt exists 1..5 } 1..4 } ok 9 - extract { ok 1 - alienfile compiles # Alien::Build::CommandSequence> + bsdtar xf /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/dist/foo-1.00.tar ok 2 - no exception ok 3 - directory exists # dir = /private/tmp/Hmjdzbfv58/root/build_5a8N/foo-1.00 ok 4 - configure exists ok 5 - foo.c exists # build.install.extract = /private/tmp/Hmjdzbfv58/root/build_5a8N/foo-1.00 ok 6 - build.install.extract is a directory ok 7 - has configure ok 8 - has foo.c 1..8 } ok 10 - build { ok 1 - plain { ok 1 ok 2 ok 3 # Alien::Build::Plugin::Core::Legacy> adding legacy hash to config # Alien::Build::Plugin::Core::Gather> mkdir -p /tmp/vNKWDtrKJ9/blib/lib/auto/share/Alien-Foo/_alien ok 4 - build ok 5 - ran gather ok 6 - has alien.json 1..6 } ok 2 - destdir { # install dir = /tmp/JURsaHveRU/root/destdir_ZBlO/tmp/Lb4Jagq4v1/usr/local # Alien::Build::Plugin::Core::Legacy> adding legacy hash to config # Alien::Build::Plugin::Core::Gather> mirror /tmp/JURsaHveRU/root/destdir_ZBlO/tmp/Lb4Jagq4v1/usr/local => /tmp/Lb4Jagq4v1/blib/lib/auto/share/Alien-Foo # Alien::Build::Util> mkdir -p /tmp/Lb4Jagq4v1/blib/lib/auto/share/Alien-Foo/bin # Alien::Build::Util> Alien::Build> cp /tmp/JURsaHveRU/root/destdir_ZBlO/tmp/Lb4Jagq4v1/usr/local/bin/foo /tmp/Lb4Jagq4v1/blib/lib/auto/share/Alien-Foo/bin/foo # Alien::Build::Util> mkdir -p /tmp/Lb4Jagq4v1/blib/lib/auto/share/Alien-Foo/lib # Alien::Build::Util> Alien::Build> cp /tmp/JURsaHveRU/root/destdir_ZBlO/tmp/Lb4Jagq4v1/usr/local/lib/libfoo.a /tmp/Lb4Jagq4v1/blib/lib/auto/share/Alien-Foo/lib/libfoo.a # Alien::Build::Plugin::Core::Gather> mkdir -p /tmp/Lb4Jagq4v1/blib/lib/auto/share/Alien-Foo/_alien # Alien::Build::Auto::Blank17=HASH(0x7fcfab1e20e0) ok 1 - directory created ok 2 - ran gather ok 3 - has alien.json ok 4 - has alienfile 1..4 } 1..2 } ok 11 - checkpoint { ok 1 - create checkpoint { ok 1 ok 2 1..2 } ok 2 - resume checkpoint { ok 1 ok 2 ok 3 1..3 } 1..2 } ok 12 - patch { ok 1 - single { # Alien::Build::Plugin::Core::Legacy> adding legacy hash to config # Alien::Build::Plugin::Core::Gather> mkdir -p /tmp/q9ZLQ2NiAp/blib/lib/auto/share/Alien-Foo/_alien ok 1 1..1 } ok 2 - double { # Alien::Build::Plugin::Core::Legacy> adding legacy hash to config # Alien::Build::Plugin::Core::Gather> mkdir -p /tmp/tJTnzKMimQ/blib/lib/auto/share/Alien-Foo/_alien ok 1 ok 2 1..2 } 1..2 } ok 13 - preload { ok 1 - has hook preload1 ok 2 - has hook preload2 1..2 } ok 14 - first probe returns share { ok 1 - share, system { # system ok 1 1..1 } ok 2 - command ok { # Alien::Build::CommandSequence> + pkg-config --exists libfoo ok 1 1..1 } ok 3 - command bad { # Alien::Build::CommandSequence> + pkg-config --exists libfoo # Alien::Build> error in probe (will do a share install): external command failed at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/CommandSequence.pm line 71. # Alien::Build> Don't panic, we will attempt a share build from source if possible. # Alien::Build> Do not file a bug unless you expected a system install to succeed. ok 1 1..1 } 1..3 } ok 15 - system { ok 1 - alienfile compiles # Alien::Build> + frooble 1234 ok 2 # Alien::Build> + xor ok 3 1..3 } ok 16 - requires pulls helpers { ok 1 - has helper foo1 ok 2 - has helper foo2 1..2 } ok 17 - around bug? { ok 1 - alienfile compiles ok 2 ok 3 ok 4 1..4 } ok 18 - requires of Alien::Build or Alien::Base { ok 1 - Alien::Build { ok 1 - alienfile compiles ok 2 1..2 } ok 2 - Alien::Base { ok 1 - alienfile compiles ok 2 1..2 } 1..2 } ok 19 - out-of-source build { ok 1 - basic { ok 1 - alienfile compiles ok 2 - alien builds okay # Alien::Build::Plugin::Core::Download> downloaded foo-1.00.tar # Alien::Build::Plugin::Core::Legacy> adding legacy hash to config # Alien::Build::Plugin::Core::Gather> mkdir -p /tmp/6bhbxJ6qt1/stage/_alien 1..2 } ok 2 - from bundled source { ok 1 - alienfile compiles ok 2 - alien builds okay # Alien::Build> error in probe (will do a share install): No hooks registered for probe at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build.pm line 397. # Alien::Build> Don't panic, we will attempt a share build from source if possible. # Alien::Build> Do not file a bug unless you expected a system install to succeed. # Alien::Build::Plugin::Core::Download> downloaded foo-1.00 # Alien::Build::Plugin::Core::Legacy> adding legacy hash to config # Alien::Build::Plugin::Core::Gather> mkdir -p /tmp/Se2RZSL5hB/stage/_alien # extract = /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/dist/foo-1.00 1..2 } 1..2 } ok 20 - test { ok 1 - good { ok 1 - alienfile compiles ok 2 - alien install type is share ok 3 - alien checkpoint ok ok 4 - alien resume ok ok 5 - alien builds okay # Alien::Build> single file, assuming archive # Alien::Build::Auto::Vkwjb34::Alienfile> the build # Alien::Build::Plugin::Core::Legacy> adding legacy hash to config # Alien::Build::Plugin::Core::Gather> mkdir -p /tmp/FvkBW5Mwjb/stage/_alien ok 6 - alien checkpoint ok ok 7 - alien resume ok # Alien::Build::Auto::Vkwjb35::Alienfile> the test ok 8 1..8 } ok 2 - bad { ok 1 - alienfile compiles ok 2 - alien install type is share ok 3 - alien checkpoint ok ok 4 - alien resume ok ok 5 - alien builds okay # Alien::Build> single file, assuming archive # Alien::Build::Plugin::Core::Legacy> adding legacy hash to config # Alien::Build::Plugin::Core::Gather> mkdir -p /tmp/oT_LDA8EfX/stage/_alien ok 6 - alien checkpoint ok ok 7 - alien resume ok # Alien::Build::Auto::Of38::Alienfile> the test ok 8 1..8 } ok 3 - ffi { ok 1 - alienfile compiles ok 2 - alien install type is share ok 3 - alien checkpoint ok ok 4 - alien resume ok ok 5 - alien builds okay # Alien::Build> single file, assuming archive # Alien::Build::Auto::Rwza40::Alienfile> the build # Alien::Build::Plugin::Core::Legacy> adding legacy hash to config # Alien::Build::Plugin::Core::Gather> mkdir -p /tmp/rKwDIza5T6/stage/_alien ok 6 - alien checkpoint ok ok 7 - alien resume ok # ok 8 1..8 } ok 4 - bad ffi { ok 1 - alienfile compiles ok 2 - alien install type is share ok 3 - alien checkpoint ok ok 4 - alien resume ok ok 5 - alien builds okay # Alien::Build> single file, assuming archive # Alien::Build::Auto::Gy43::Alienfile> the build # Alien::Build::Plugin::Core::Legacy> adding legacy hash to config # Alien::Build::Plugin::Core::Gather> mkdir -p /tmp/N2gyZAQ5WM/stage/_alien ok 6 - alien checkpoint ok ok 7 - alien resume ok # ok 8 1..8 } ok 5 - system good { ok 1 - alienfile compiles ok 2 - alien install type is system ok 3 - alien checkpoint ok ok 4 - alien resume ok ok 5 - alien builds okay # Alien::Build::Plugin::Core::Legacy> adding legacy hash to config # Alien::Build::Plugin::Core::Gather> mkdir -p /tmp/8HBSUXsCri/stage/_alien ok 6 - alien checkpoint ok ok 7 - alien resume ok # Alien::Build::Auto::Sri47::Alienfile> in test! ok 8 ok 9 1..9 } ok 6 - system bad { ok 1 - alienfile compiles ok 2 - alien install type is system ok 3 - alien checkpoint ok ok 4 - alien resume ok ok 5 - alien builds okay # Alien::Build::Plugin::Core::Legacy> adding legacy hash to config # Alien::Build::Plugin::Core::Gather> mkdir -p /tmp/7FpRrhEn31/stage/_alien ok 6 - alien checkpoint ok ok 7 - alien resume ok # Alien::Build::Auto::Prhn50::Alienfile> in test! ok 8 ok 9 1..9 } 1..6 } ok 21 - pkg-config path during build { ok 1 - alienfile compiles ok 2 - alien builds okay # Alien::Build> single file, assuming archive # Alien::Build::Plugin::Core::Legacy> adding legacy hash to config # Alien::Build::Plugin::Core::Gather> mkdir -p /tmp/H9QtO2zj6A/stage/_alien ok 3 - has arch and arch-indy pkg-config paths 1..3 } ok 22 - network available { ok 1 - default { ok 1 - alienfile compiles ok 2 1..2 } ok 2 - override { ok 1 - alienfile compiles ok 2 1..2 } ok 3 - ALIEN_INSTALL_NETWORK=1 { ok 1 - alienfile compiles ok 2 1..2 } ok 4 - ALIEN_INSTALL_NETWORK=0 { ok 1 - alienfile compiles ok 2 1..2 } 1..4 } ok 23 - local_source { ok 1 - start_url undefined { ok 1 - alienfile compiles ok 2 1..2 } ok 2 - start_url undefined override { ok 1 - alienfile compiles ok 2 1..2 } ok 3 - start_url = foo/bar/baz { ok 1 - alienfile compiles ok 2 1..2 } ok 4 - start_url = C:/foo/bar/baz { ok 1 - alienfile compiles ok 2 1..2 } ok 5 - start_url = /foo/bar/baz { ok 1 - alienfile compiles ok 2 1..2 } ok 6 - start_url = ./foo/bar/baz { ok 1 - alienfile compiles ok 2 1..2 } ok 7 - start_url = http://foo.example/foo/bar/baz { ok 1 - alienfile compiles ok 2 1..2 } ok 8 - start_url = http://foo.example/foo/bar/baz override { ok 1 - alienfile compiles ok 2 1..2 } 1..8 } ok 24 - do not allow network install { ok 1 - share { ok 1 - alienfile compiles # Alien::Build> install type share requested or detected, but network fetch is turned off # Alien::Build> see https://metacpan.org/pod/Alien::Build::Manual::FAQ#Network-fetch-is-turned-off ok 2 1..2 } ok 2 - system { ok 1 - alienfile compiles ok 2 - alien install type is system 1..2 } 1..2 } ok 25 - interpolate env overrides { ok 1 - alienfile compiles ok 2 - alien builds okay # Alien::Build::Plugin::Core::Download> downloaded foo-1.00.tar # Alien::Build::Plugin::Core::Legacy> adding legacy hash to config # Alien::Build::Plugin::Core::Gather> mkdir -p /tmp/XzBkrJVUTa/stage/_alien 1..2 } 1..25 ok t/alien_build_commandsequence.t ...................... ok 1 - basic { ok 1 - Alien::Build::CommandSequence=HASH->isa('Alien::Build::CommandSequence') 1..1 } ok 2 - apply requirements { ok 1 1..1 } ok 3 - execute { # Alien::Build::CommandSequence> + myfoo # Alien::Build::CommandSequence> + stuff myfoo ok 1 - plain # Alien::Build::CommandSequence> + bogus # external command failed at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/CommandSequence.pm line 87. ok 2 # Alien::Build::CommandSequence> + stuff myfoo # Alien::Build::CommandSequence> [output consumed by Alien::Build recipe] ok 3 # Alien::Build::CommandSequence> + bogus myfoo # Alien::Build::CommandSequence> [output consumed by Alien::Build recipe] ok 4 # Alien::Build::CommandSequence> + stuff2 myfoo # Alien::Build::CommandSequence> [output consumed by Alien::Build recipe] ok 5 # Alien::Build::CommandSequence> + stuff2 myfoo # Alien::Build::CommandSequence> [output consumed by Alien::Build recipe] ok 6 ok 7 # Alien::Build::CommandSequence> + stuff2 myfoo # Alien::Build::CommandSequence> [output consumed by Alien::Build recipe] ok 8 ok 9 1..9 } 1..3 ok t/alien_build_commandsequence__cd.t .................. ok 1 - cd list { # Alien::Build::CommandSequence> + mkdir -p /tmp/HWoJt8Fm7e/foo # Alien::Build::CommandSequence> + cd /tmp/HWoJt8Fm7e/foo ok 1 - created file ok 2 - content 1..2 } ok 2 - cd list { # Alien::Build::CommandSequence> + mkdir -p /tmp/suG9gIJkgg/foo # Alien::Build::CommandSequence> + cd /tmp/suG9gIJkgg/foo ok 1 - created file ok 2 - content 1..2 } ok 3 - cd list with code ref { # Alien::Build::CommandSequence> + mkdir -p /tmp/mlw9DlxlFZ/foo # Alien::Build::CommandSequence> + cd /tmp/mlw9DlxlFZ/foo # Alien::Build::CommandSequence> [output consumed by Alien::Build recipe] ok 1 - created file ok 2 - content 1..2 } 1..3 ok t/alien_build_interpolate.t .......................... ok 1 - basic usage { ok 1 - Alien::Build::Interpolate=HASH->isa('Alien::Build::Interpolate') ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 - error! # Alien::foomake version 0.29 required--this is only version 0.25 at (eval 82) line 1. # BEGIN failed--compilation aborted at (eval 82) line 1. ok 8 - error! # Can't locate Alien/foobogus.pm in @INC (you may need to install the Alien::foobogus module) (@INC contains: corpus/lib /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/arch /Users/fly2400/cpanfly-5.24/var/megalib /Users/fly2400/Library/ActivePerl-5.24/lib /Users/fly2400/ap2400-300558/site/lib /Users/fly2400/ap2400-300558/lib .) at (eval 83) line 1. # BEGIN failed--compilation aborted at (eval 83) line 1. ok 9 - requires ok 10 ok 11 ok 12 1..12 } ok 2 - clone { ok 1 - Alien::Build::Interpolate=HASH->isa('Alien::Build::Interpolate') ok 2 ok 3 ok 4 ok 5 1..5 } ok 3 - property { ok 1 - Alien::Build::Interpolate=HASH->isa('Alien::Build::Interpolate') ok 2 ok 3 ok 4 1..4 } ok 4 - property, default to alien { ok 1 - Alien::Build::Interpolate=HASH->isa('Alien::Build::Interpolate') ok 2 1..2 } ok 5 - has_helper { ok 1 ok 2 ok 3 ok 4 1..4 } 1..5 ok t/alien_build_interpolate_default.t .................. ok 1 - basic usage { ok 1 - Alien::Build::Interpolate::Default=HASH->isa('Alien::Build::Interpolate') # --- !!perl/hash:Alien::Build::Interpolate::Default # classes: {} # helper: # ar: # code: !!perl/code '{ "DUMMY" }' # require: # Config: 0 # bison: # code: ~ # require: # Alien::bison: 0.17 # bzip2: # code: ~ # require: # Alien::Libbz2: 0.04 # cc: # code: !!perl/code '{ "DUMMY" }' # require: # Config: 0 # cmake: # code: !!perl/code '{ "DUMMY" }' # require: # Alien::CMake: 0.07 # cp: # code: !!perl/code '{ "DUMMY" }' # require: # Config: 0 # cwd: # code: !!perl/code '{ "DUMMY" }' # devnull: # code: !!perl/code '{ "DUMMY" }' # flex: # code: ~ # require: # Alien::flex: 0.08 # gmake: # code: ~ # require: # Alien::gmake: 0.11 # install: # code: !!perl/code '{ "DUMMY" }' # require: # Alien::MSYS: 0.07 # ld: # code: !!perl/code '{ "DUMMY" }' # require: # Config: 0 # m4: # code: ~ # require: # Alien::m4: 0.08 # make: # code: !!perl/code '{ "DUMMY" }' # require: # Config: 0 # make_path: # code: !!perl/code '{ "DUMMY" }' # require: # Alien::Build: 1.05 # mkdir_deep: # code: !!perl/code '{ "DUMMY" }' # require: # Alien::Build: 1.04 # nasm: # code: ~ # require: # Alien::nasm: 0.11 # patch: # code: ~ # require: # Alien::patch: 0.09 # perl: # code: !!perl/code '{ "DUMMY" }' # require: # Devel::FindPerl: 0 # pkgconf: # code: ~ # require: # Alien::pkgconf: 0.06 # rm: # code: !!perl/code '{ "DUMMY" }' # require: # Config: 0 # sh: # code: !!perl/code '{ "DUMMY" }' # require: # Alien::MSYS: 0.07 # xz: # code: ~ # require: # Alien::xz: 0.02 1..1 } ok 2 - cwd { ok 1 - %{cwd} is okay # val = /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue 1..1 } ok 3 - mkdir_deep { ok 1 1..1 } ok 4 - make_path { ok 1 1..1 } 1..4 ok t/alien_build_meta.t ................................. ok 1 - basic { ok 1 - alienfile compiles ok 2 - Alien::Build::Meta=HASH->isa('Alien::Build::Meta') 1..2 } 1..1 ok t/alien_build_mm.t ................................... ok 1 - basic { ok 1 - system { ok 1 - Alien::Build::MM=HASH->isa('Alien::Build::MM') ok 2 - Alien::Build::Auto::X0=HASH->isa('Alien::Build') ok 3 - stage dir # stage = /private/tmp/sBcPJzlv2M/blib/lib/auto/share/dist/Alien-Foo ok 4 ok 5 - left alien directory ok 6 - left alien.json file 1..6 } ok 2 - share { ok 1 - Alien::Build::MM=HASH->isa('Alien::Build::MM') ok 2 - Alien::Build::Auto::X1=HASH->isa('Alien::Build') ok 3 1..3 } 1..2 } ok 2 - mm_postamble { ok 1 - returned a true value # realclean :: alien_realclean # # alien_realclean: # $(RM_RF) _alien # # alien_prefix : _alien/mm/prefix # # _alien/mm/prefix : # $(FULLPERL) -MAlien::Build::MM=cmd -e prefix $(INSTALLDIRS) $(INSTALLARCHLIB) $(INSTALLSITEARCH) $(INSTALLVENDORARCH) # # alien_version : _alien/mm/version # # _alien/mm/version : _alien/mm/prefix # $(FULLPERL) -MAlien::Build::MM=cmd -e version $(VERSION) # # alien_download : _alien/mm/download # # _alien/mm/download : _alien/mm/prefix _alien/mm/version # $(FULLPERL) -MAlien::Build::MM=cmd -e download # # alien_build : _alien/mm/build # # _alien/mm/build : _alien/mm/download # $(FULLPERL) -MAlien::Build::MM=cmd -e build # # pure_all :: _alien/mm/build # # subdirs-test_dynamic subdirs-test_static subdirs-test :: alien_test # # alien_test : # $(FULLPERL) -MAlien::Build::MM=cmd -e test # # alien_prop : # $(FULLPERL) -MAlien::Build::MM=cmd -e dumpprop # # alien_prop_meta : # $(FULLPERL) -MAlien::Build::MM=cmd -e dumpprop meta # # alien_prop_install : # $(FULLPERL) -MAlien::Build::MM=cmd -e dumpprop install # # alien_prop_runtime : # $(FULLPERL) -MAlien::Build::MM=cmd -e dumpprop install # 1..1 } ok 3 - set_prefix { ok 1 - type = perl { # main> prefix /private/tmp/IMTpOmw2w4/foo/perl/auto/share/dist/Alien-Foo # _alien/mm/prefix ok 1 - touched prefix ok 2 - correct path 1..2 } ok 2 - type = site { # main> prefix /private/tmp/HkOj2ms1aq/foo/site/auto/share/dist/Alien-Foo # _alien/mm/prefix ok 1 - touched prefix ok 2 - correct path 1..2 } ok 3 - type = vendor { # main> prefix /private/tmp/bUQOI7zJSf/foo/vendor/auto/share/dist/Alien-Foo # _alien/mm/prefix ok 1 - touched prefix ok 2 - correct path 1..2 } 1..3 } ok 4 - download + build { # main> prefix /tmp/zxZMje9ypD/auto/share/dist/Alien-Foo # _alien/mm/prefix # + IN DOWNLOAD + # Alien::Build> single file, assuming archive # _alien/mm/download ok 1 - touched download ok 2 - download # + IN EXTRACT + # + IN BUILD + # Alien::Build::Plugin::Core::Legacy> adding legacy hash to config # Alien::Build::Plugin::Core::Gather> mkdir -p /private/tmp/dGn2GNVlzl/blib/lib/auto/share/dist/Alien-Foo/_alien # + IN EXTRACT + # _alien/mm/build ok 3 - touched build ok 4 - build 1..4 } ok 5 - patch { ok 1 - patch is defined ok 2 - got the correct directory 1..2 } 1..5 ok t/alien_build_plugin.t ............................... ok 1 - basic { ok 1 - Alien::Build::Plugin=HASH->isa('Alien::Build::Plugin') 1..1 } ok 2 - properties { ok 1 - defaults { ok 1 ok 2 1..2 } ok 2 - override { ok 1 ok 2 1..2 } ok 3 - set { ok 1 ok 2 1..2 } 1..3 } ok 3 - subplugin { ok 1 - warns ok 2 - Alien::Build::Plugin::Foo::Bar=HASH->isa('Alien::Build::Plugin') ok 3 - Alien::Build::Plugin::Foo::Bar=HASH->isa('Alien::Build::Plugin::Foo::Bar') ok 4 ok 5 1..5 } 1..3 ok t/alien_build_plugin_build_autoconf.t ................ ok 1 - basic { ok 1 - Alien::Build::Plugin::Build::Autoconf=HASH->isa('Alien::Build::Plugin') ok 2 - Alien::Build::Plugin::Build::Autoconf=HASH->isa('Alien::Build::Plugin::Build::Autoconf') ok 3 - alienfile compiles ok 4 - %{configure} = ./configure --with-pic ok 5 ok 6 ok 7 ok 8 1..8 } ok 2 - turn off --with-pic { ok 1 ok 2 - alienfile compiles ok 3 - %{configure} = ./configure ok 4 1..4 } ok 3 - out-of-source { ok 1 - alienfile compiles # --- # patch: ~ # prefix: /tmp/DeTzXB69H4/prefix # root: /tmp/DeTzXB69H4/root # stage: /tmp/DeTzXB69H4/stage ok 2 - before build { # %{configure} = ./configure ok 1 1..1 } ok 3 - alien builds okay # Alien::Build::Plugin::Core::Download> downloaded foo-1.00.tar # Alien::Build::Auto::Ez2::Alienfile> --- # autoconf_prefix: /tmp/DeTzXB69H4/prefix # complete: # download: 1 # download: /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/dist/foo-1.00.tar # extract: /private/tmp/DeTzXB69H4/root/extract_Fksp/foo-1.00 # patch: ~ # prefix: /tmp/DeTzXB69H4/prefix # root: /tmp/DeTzXB69H4/root # stage: /tmp/DeTzXB69H4/stage # Alien::Build::Auto::Ez2::Alienfile> prefix = /tmp/DeTzXB69H4/prefix # Alien::Build::Plugin::Core::Legacy> adding legacy hash to config # Alien::Build::Plugin::Core::Gather> mirror /tmp/DeTzXB69H4/root/destdir_WgrK/tmp/DeTzXB69H4/prefix => /tmp/DeTzXB69H4/stage # Alien::Build::Util> Alien::Build> cp /tmp/DeTzXB69H4/root/destdir_WgrK/tmp/DeTzXB69H4/prefix/file2 /tmp/DeTzXB69H4/stage/file2 # Alien::Build::Plugin::Core::Gather> mkdir -p /tmp/DeTzXB69H4/stage/_alien # --- # _ab_build_ffi: /private/tmp/DeTzXB69H4/root/build_kxhc # _ab_build_share: /private/tmp/DeTzXB69H4/root/build_1wh2 # autoconf_prefix: /tmp/DeTzXB69H4/prefix # complete: # download: 1 # download: /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/dist/foo-1.00.tar # extract: /private/tmp/DeTzXB69H4/root/extract_Fksp/foo-1.00 # patch: ~ # prefix: /tmp/DeTzXB69H4/prefix # root: /tmp/DeTzXB69H4/root # stage: /tmp/DeTzXB69H4/stage ok 4 - after build { # %{configure} = /private/tmp/DeTzXB69H4/root/extract_Fksp/foo-1.00/configure --prefix=/tmp/DeTzXB69H4/prefix ok 1 - matches ok 2 - configure is in the right spot ok 3 - foo.c is in the right spot 1..3 } 1..4 } 1..3 ok t/alien_build_plugin_build_cmake.t ................... skipped: Module 'Alien::cmake3' is not installed t/alien_build_plugin_build_make.t .................... ok 1 - compile { ok 1 - nmake { ok 1 - alienfile compiles ok 2 1..2 } ok 2 - dmake { ok 1 - alienfile compiles ok 2 1..2 } ok 3 - gmake { ok 1 - alienfile compiles 1..1 } ok 4 - umake { ok 1 - alienfile compiles 1..1 } 1..4 } ok 2 - gmake { 1..0 # SKIP test requires GNU Make or Alien::gmake } 1..2 ok t/alien_build_plugin_build_msys.t .................... ok 1 - basic { ok 1 - Alien::Build::Plugin::Build::MSYS=HASH->isa('Alien::Build::Plugin') ok 2 - Alien::Build::Plugin::Build::MSYS=HASH->isa('Alien::Build::Plugin::Build::MSYS') ok 3 - alienfile compiles 1..3 } 1..1 ok t/alien_build_plugin_build_searchdep.t ............... ok 1 - basic { ok 1 - set configure require for self ok 2 - set share require for Env::ShellWords ok 3 - set share require for Alien::libfoo2 # Alien::Build::Plugin::Core::Download> downloaded foo-1.00.tar # Alien::Build::Plugin::Core::Legacy> adding legacy hash to config # Alien::Build::Plugin::Core::Gather> mkdir -p /tmp/4X6MfDMzng/stage/_alien ok 4 - cflags ok 5 - cflags_static ok 6 - libs ok 7 - libs_static ok 8 - my_CFLAGS ok 9 - my_CXXFLAGS ok 10 - my_LDFLAGS 1..10 } ok 2 - public_I { # Alien::Build::Plugin::Core::Download> downloaded foo-1.00.tar # Alien::Build::Plugin::Core::Legacy> adding legacy hash to config # Alien::Build::Plugin::Core::Gather> mkdir -p /tmp/mXL6mqMlLy/stage/_alien ok 1 ok 2 ok 3 ok 4 1..4 } ok 3 - public_l { # Alien::Build::Plugin::Core::Download> downloaded foo-1.00.tar # Alien::Build::Plugin::Core::Legacy> adding legacy hash to config # Alien::Build::Plugin::Core::Gather> mkdir -p /tmp/oLwDZ39CnN/stage/_alien ok 1 ok 2 ok 3 ok 4 1..4 } ok 4 - list { ok 1 - set configure require for self ok 2 - set share require for Env::ShellWords ok 3 - set share require for Alien::libfoo1 ok 4 - set share require for Alien::libfoo2 1..4 } ok 5 - hash { ok 1 - set configure require for self ok 2 - set share require for Env::ShellWords ok 3 - set share require for Alien::libfoo2 1..3 } 1..5 ok t/alien_build_plugin_core_download.t ................. not ok 1 - there should be a test # TODO test not written # Failed test 'there should be a test' # at t/alien_build_plugin_core_download.t line 5. 1..1 ok t/alien_build_plugin_core_ffi.t ...................... ok 1 - basic { # Alien::Build> single file, assuming archive # in build # Alien::Build::Plugin::Core::Legacy> adding legacy hash to config # Alien::Build::Plugin::Core::Gather> mirror /tmp/xNAseJ1jQM/root/destdir_ig7i/tmp/xNAseJ1jQM/prefix => /tmp/xNAseJ1jQM/stage # Alien::Build::Util> mkdir -p /tmp/xNAseJ1jQM/stage/lib # Alien::Build::Util> Alien::Build> cp /tmp/xNAseJ1jQM/root/destdir_ig7i/tmp/xNAseJ1jQM/prefix/lib/libfoo.a /tmp/xNAseJ1jQM/stage/lib/libfoo.a # Alien::Build::Plugin::Core::Gather> mkdir -p /tmp/xNAseJ1jQM/stage/_alien # in build_ffi DESTDIR = /tmp/xNAseJ1jQM/root/destdir_qe5Y # in gather_ffi # Alien::Build::Plugin::Core::Gather> mirror /tmp/xNAseJ1jQM/root/destdir_qe5Y/tmp/xNAseJ1jQM/prefix => /tmp/xNAseJ1jQM/stage # Alien::Build::Util> mkdir -p /tmp/xNAseJ1jQM/stage/dynamic # Alien::Build::Util> Alien::Build> cp /tmp/xNAseJ1jQM/root/destdir_qe5Y/tmp/xNAseJ1jQM/prefix/dynamic/libfoo.so /tmp/xNAseJ1jQM/stage/dynamic/libfoo.so ok 1 - did patch_ffi ok 2 - did build_ffi ok 3 - did gather_ffi ok 4 - has static lib ok 5 - has dynamic lib ok 6 - filter out garbage 1..6 } ok 2 - deprecated { # patch_ffi is deprecated, use ffi { patch ... } } instead at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/t/alien_build_plugin_core_ffi.t line 95. # build_ffi is deprecated, use ffi { build ... } } instead at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/t/alien_build_plugin_core_ffi.t line 106. # gather_ffi is deprecated, use ffi { gather ... } } instead at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/t/alien_build_plugin_core_ffi.t line 112. # build warnings: # Alien::Build> single file, assuming archive # in build # Alien::Build::Plugin::Core::Legacy> adding legacy hash to config # Alien::Build::Plugin::Core::Gather> mirror /tmp/Qh3Vb3F0fT/root/destdir_MtjK/tmp/Qh3Vb3F0fT/prefix => /tmp/Qh3Vb3F0fT/stage # Alien::Build::Util> mkdir -p /tmp/Qh3Vb3F0fT/stage/lib # Alien::Build::Util> Alien::Build> cp /tmp/Qh3Vb3F0fT/root/destdir_MtjK/tmp/Qh3Vb3F0fT/prefix/lib/libfoo.a /tmp/Qh3Vb3F0fT/stage/lib/libfoo.a # Alien::Build::Plugin::Core::Gather> mkdir -p /tmp/Qh3Vb3F0fT/stage/_alien # in build_ffi DESTDIR = /tmp/Qh3Vb3F0fT/root/destdir_m3M1 # in gather_ffi # Alien::Build::Plugin::Core::Gather> mirror /tmp/Qh3Vb3F0fT/root/destdir_m3M1/tmp/Qh3Vb3F0fT/prefix => /tmp/Qh3Vb3F0fT/stage # Alien::Build::Util> mkdir -p /tmp/Qh3Vb3F0fT/stage/dynamic # Alien::Build::Util> Alien::Build> cp /tmp/Qh3Vb3F0fT/root/destdir_m3M1/tmp/Qh3Vb3F0fT/prefix/dynamic/libfoo.so /tmp/Qh3Vb3F0fT/stage/dynamic/libfoo.so ok 1 - did patch_ffi ok 2 - did build_ffi ok 3 - did gather_ffi ok 4 - has static lib ok 5 - has dynamic lib ok 6 - filter out garbage 1..6 } 1..2 ok t/alien_build_plugin_core_gather.t ................... ok 1 - destdir filter { # Alien::Build> single file, assuming archive # Alien::Build::Plugin::Core::Legacy> adding legacy hash to config # Alien::Build::Plugin::Core::Gather> mirror /tmp/GeU1f2Aqfb/root/destdir_o495/tmp/GeU1f2Aqfb/prefix => /tmp/GeU1f2Aqfb/stage # Alien::Build::Util> mkdir -p /tmp/GeU1f2Aqfb/stage/bin # Alien::Build::Util> Alien::Build> cp /tmp/GeU1f2Aqfb/root/destdir_o495/tmp/GeU1f2Aqfb/prefix/bin/foo.exe /tmp/GeU1f2Aqfb/stage/bin/foo.exe # Alien::Build::Util> mkdir -p /tmp/GeU1f2Aqfb/stage/lib # Alien::Build::Util> Alien::Build> cp /tmp/GeU1f2Aqfb/root/destdir_o495/tmp/GeU1f2Aqfb/prefix/lib/libfoo.a /tmp/GeU1f2Aqfb/stage/lib/libfoo.a # Alien::Build::Plugin::Core::Gather> mkdir -p /tmp/GeU1f2Aqfb/stage/_alien # --- # _ab_build_ffi: /private/tmp/GeU1f2Aqfb/root/build_qh0j # _ab_build_share: /private/tmp/GeU1f2Aqfb/root/build_TQjq # complete: # download: 1 # download: /private/tmp/GeU1f2Aqfb/root/download_UkQu/foo-1.00.tar.gz # extract: /tmp/GeU1f2Aqfb/root/build_TQjq # patch: ~ # prefix: /tmp/GeU1f2Aqfb/prefix # root: /tmp/GeU1f2Aqfb/root # stage: /tmp/GeU1f2Aqfb/stage ok 1 - bin/foo.exe ok 2 - lib/libfoo.a ok 3 - etc/foorc 1..3 } ok 2 - patch { # Alien::Build> single file, assuming archive # prefix = /tmp/PRbx4Zgu36/stage # Alien::Build::Plugin::Core::Legacy> adding legacy hash to config # Alien::Build::Plugin::Core::Gather> mkdir -p /tmp/PRbx4Zgu36/stage/_alien ok 1 # --- # _ab_build_ffi: /private/tmp/PRbx4Zgu36/root/build_DIUO # _ab_build_share: /private/tmp/PRbx4Zgu36/root/build_3hHo # complete: # download: 1 # download: /private/tmp/PRbx4Zgu36/root/download_1KJD/foo-1.00.tar.gz # extract: /tmp/PRbx4Zgu36/root/build_3hHo # patch: /tmp/cbZ3jRCFgw # prefix: /tmp/PRbx4Zgu36/stage # root: /tmp/PRbx4Zgu36/root # stage: /tmp/PRbx4Zgu36/stage ok 2 1..2 } ok 3 - pkg-config path during gather { ok 1 - alienfile compiles ok 2 - alien builds okay # Alien::Build> single file, assuming archive # Alien::Build::Auto::Dibi2::Alienfile> prefix = /tmp/Z1dK_PiBbi/stage # Alien::Build::Plugin::Core::Legacy> adding legacy hash to config # Alien::Build::Plugin::Core::Gather> mkdir -p /tmp/Z1dK_PiBbi/stage/_alien ok 3 - has arch and arch-indy pkg-config paths 1..3 } 1..3 ok t/alien_build_plugin_core_legacy.t ................... ok 1 - basic { ok 1 - cflags ok 2 - libs ok 3 - cflags_static ok 4 - libs_static ok 5 - legacy hash 1..5 } 1..1 ok t/alien_build_plugin_core_override.t ................. ok 1 - basic { ok 1 - default { ok 1 - system { ok 1 - alienfile compiles ok 2 - alien install type is system 1..2 } ok 2 - share { ok 1 - alienfile compiles ok 2 - alien install type is share 1..2 } ok 3 - die { ok 1 - alienfile compiles ok 2 - alien install type is share 1..2 } 1..3 } ok 2 - share { ok 1 - alienfile compiles ok 2 - alien install type is share 1..2 } ok 3 - system { ok 1 - probe okay { ok 1 - alienfile compiles ok 2 - alien install type is system 1..2 } ok 2 - probe share { ok 1 - alienfile compiles ok 2 1..2 } ok 3 - probe exception { ok 1 - alienfile compiles ok 2 1..2 } 1..3 } 1..3 } ok 2 - override the override { ok 1 - syste, share { ok 1 - alienfile compiles ok 2 - alien install type is share 1..2 } ok 2 - share, system { ok 1 - alienfile compiles ok 2 - alien install type is system 1..2 } 1..2 } 1..2 ok t/alien_build_plugin_core_setup.t .................... ok 1 - compiler type { ok 1 - alienfile compiles ok 2 - has a compiler type # compiler type = unix 1..2 } 1..1 ok t/alien_build_plugin_core_tail.t ..................... ok 1 - out-of-source build { ok 1 - alienfile compiles ok 2 1..2 } 1..1 ok t/alien_build_plugin_decode_dirlisting.t ............. ok 1 - updates requires { ok 1 ok 2 # --- !!perl/hash:Alien::Build::Meta # around: # gather_ffi: !!perl/code '{ "DUMMY" }' # gather_share: !!perl/code '{ "DUMMY" }' # gather_system: !!perl/code '{ "DUMMY" }' # build_suffix: '' # class: Alien::Build::Auto::Blank0 # default_hook: # build_ffi: &1 !!perl/code '{ "DUMMY" }' # download: !!perl/code '{ "DUMMY" }' # gather_ffi: *1 # gather_share: &2 !!perl/code '{ "DUMMY" }' # gather_system: *2 # override: !!perl/code '{ "DUMMY" }' # filename: /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/blank/alienfile # hook: # decode: # - !!perl/code '{ "DUMMY" }' # phase: any # prop: # arch: 1 # destdir_ffi_filter: '^dynamic' # local_source: 0 # network: 1 # platform: # compiler_type: unix # system_type: unix # require: # any: {} # share: # File::Listing: 0 # URI: 0 # system: {} 1..2 } ok 2 - decode { ok 1 - parse corpus/dir/ftp.list { ok 1 # url = ftp://example.test/foo/bar/foo-1.00 # url = ftp://example.test/foo/bar/foo-1.00.tar # url = ftp://example.test/foo/bar/foo-1.00.tar.Z # url = ftp://example.test/foo/bar/foo-1.00.tar.bz2 # url = ftp://example.test/foo/bar/foo-1.00.tar.gz # url = ftp://example.test/foo/bar/foo-1.00.tar.xz # url = ftp://example.test/foo/bar/foo-1.00.zip 1..1 } ok 2 - parse corpus/dir/ftp_abs.list { ok 1 # url = ftp://example.test/xyz/abc/foo-1.00 # url = ftp://example.test/xyz/abc/foo-1.00.tar # url = ftp://example.test/xyz/abc/foo-1.00.tar.Z # url = ftp://example.test/xyz/abc/foo-1.00.tar.bz2 # url = ftp://example.test/xyz/abc/foo-1.00.tar.gz # url = ftp://example.test/xyz/abc/foo-1.00.tar.xz # url = ftp://example.test/xyz/abc/foo-1.00.zip 1..1 } 1..2 } 1..2 ok t/alien_build_plugin_decode_dirlistingftpcopy.t ...... ok 1 - updates requires { ok 1 ok 2 # --- !!perl/hash:Alien::Build::Meta # around: # gather_ffi: !!perl/code '{ "DUMMY" }' # gather_share: !!perl/code '{ "DUMMY" }' # gather_system: !!perl/code '{ "DUMMY" }' # build_suffix: '' # class: Alien::Build::Auto::Blank0 # default_hook: # build_ffi: &1 !!perl/code '{ "DUMMY" }' # download: !!perl/code '{ "DUMMY" }' # gather_ffi: *1 # gather_share: &2 !!perl/code '{ "DUMMY" }' # gather_system: *2 # override: !!perl/code '{ "DUMMY" }' # filename: /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/blank/alienfile # hook: # decode: # - !!perl/code '{ "DUMMY" }' # phase: any # prop: # arch: 1 # destdir_ffi_filter: '^dynamic' # local_source: 0 # network: 1 # platform: # compiler_type: unix # system_type: unix # require: # any: {} # share: # File::Listing: 0 # URI: 0 # system: {} 1..2 } ok 2 - decode { ok 1 - parse corpus/dir/ftp.list { ok 1 # url = ftp://example.test/foo/bar/foo-1.00 # url = ftp://example.test/foo/bar/foo-1.00.tar # url = ftp://example.test/foo/bar/foo-1.00.tar.Z # url = ftp://example.test/foo/bar/foo-1.00.tar.bz2 # url = ftp://example.test/foo/bar/foo-1.00.tar.gz # url = ftp://example.test/foo/bar/foo-1.00.tar.xz # url = ftp://example.test/foo/bar/foo-1.00.zip 1..1 } ok 2 - parse corpus/dir/ftp_abs.list { ok 1 # url = ftp://example.test/xyz/abc/foo-1.00 # url = ftp://example.test/xyz/abc/foo-1.00.tar # url = ftp://example.test/xyz/abc/foo-1.00.tar.Z # url = ftp://example.test/xyz/abc/foo-1.00.tar.bz2 # url = ftp://example.test/xyz/abc/foo-1.00.tar.gz # url = ftp://example.test/xyz/abc/foo-1.00.tar.xz # url = ftp://example.test/xyz/abc/foo-1.00.zip 1..1 } 1..2 } 1..2 ok t/alien_build_plugin_decode_html.t ................... ok 1 - updates requires { ok 1 ok 2 # --- !!perl/hash:Alien::Build::Meta # around: # gather_ffi: !!perl/code '{ "DUMMY" }' # gather_share: !!perl/code '{ "DUMMY" }' # gather_system: !!perl/code '{ "DUMMY" }' # build_suffix: '' # class: Alien::Build::Auto::Blank0 # default_hook: # build_ffi: &1 !!perl/code '{ "DUMMY" }' # download: !!perl/code '{ "DUMMY" }' # gather_ffi: *1 # gather_share: &2 !!perl/code '{ "DUMMY" }' # gather_system: *2 # override: !!perl/code '{ "DUMMY" }' # filename: /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/blank/alienfile # hook: # decode: # - !!perl/code '{ "DUMMY" }' # phase: any # prop: # arch: 1 # destdir_ffi_filter: '^dynamic' # local_source: 0 # network: 1 # platform: # compiler_type: unix # system_type: unix # require: # any: {} # share: # HTML::LinkExtor: 0 # URI: 0 # URI::Escape: 0 # system: {} 1..2 } ok 2 - decode { ok 1 - parse corpus/dir/file.html { ok 1 # filename = foo-1.00 # filename = foo-1.00.tar # filename = foo-1.00.tar.Z # filename = foo-1.00.tar.bz2 # filename = foo-1.00.tar.gz # filename = foo-1.00.tar.xz # filename = foo-1.00.tgz # filename = foo-1.00.zip # url = file:///home/ollisg/dev/Alien-Build/corpus/dist/foo-1.00/ # url = file:///home/ollisg/dev/Alien-Build/corpus/dist/foo-1.00.tar # url = file:///home/ollisg/dev/Alien-Build/corpus/dist/foo-1.00.tar.Z # url = file:///home/ollisg/dev/Alien-Build/corpus/dist/foo-1.00.tar.bz2 # url = file:///home/ollisg/dev/Alien-Build/corpus/dist/foo-1.00.tar.gz # url = file:///home/ollisg/dev/Alien-Build/corpus/dist/foo-1.00.tar.xz # url = file:///home/ollisg/dev/Alien-Build/corpus/dist/foo-1.00.tgz # url = file:///home/ollisg/dev/Alien-Build/corpus/dist/foo-1.00.zip 1..1 } ok 2 - parse corpus/dir/http.html { ok 1 # filename = foo-1.00 # filename = foo-1.00.tar # filename = foo-1.00.tar.Z # filename = foo-1.00.tar.bz2 # filename = foo-1.00.tar.gz # filename = foo-1.00.tar.xz # filename = foo-1.00.tgz # filename = foo-1.00.zip # url = http://example.test/corpus/dist/foo-1.00/ # url = http://example.test/corpus/dist/foo-1.00.tar # url = http://example.test/corpus/dist/foo-1.00.tar.Z # url = http://example.test/corpus/dist/foo-1.00.tar.bz2 # url = http://example.test/corpus/dist/foo-1.00.tar.gz # url = http://example.test/corpus/dist/foo-1.00.tar.xz # url = http://example.test/corpus/dist/foo-1.00.tgz # url = http://example.test/corpus/dist/foo-1.00.zip 1..1 } ok 3 - parse corpus/dir/http_rel.html { ok 1 # filename = foo-1.00 # filename = foo-1.00.tar # filename = foo-1.00.tar.Z # filename = foo-1.00.tar.bz2 # filename = foo-1.00.tar.gz # filename = foo-1.00.tar.xz # filename = foo-1.00.tgz # filename = foo-1.00.zip # url = http://example.test/foo/bar/foo-1.00/ # url = http://example.test/foo/bar/foo-1.00.tar # url = http://example.test/foo/bar/foo-1.00.tar.Z # url = http://example.test/foo/bar/foo-1.00.tar.bz2 # url = http://example.test/foo/bar/foo-1.00.tar.gz # url = http://example.test/foo/bar/foo-1.00.tar.xz # url = http://example.test/foo/bar/foo-1.00.tgz # url = http://example.test/foo/bar/foo-1.00.zip 1..1 } 1..3 } 1..2 ok t/alien_build_plugin_download_negotiate.t ............ ok 1 - pick fetch { ok 1 - http { ok 1 ok 2 1..2 } ok 2 - https { ok 1 ok 2 1..2 } ok 3 - ftp direct { ok 1 ok 2 1..2 } ok 4 - ftp direct proxy { ok 1 ok 2 1..2 } ok 5 - local file URI { ok 1 ok 2 1..2 } ok 6 - local file { ok 1 ok 2 1..2 } ok 7 - bootstrap ssl { ok 1 - without Net::SSLeay { # Devel::Hide hides Net/SSLeay.pm ok 1 1..1 } ok 2 - with Net::SSLeay { ok 1 1..1 } 1..2 } ok 8 - bootstrap ssl http { ok 1 1..1 } 1..8 } ok 2 - get the version { # Alien::Build::Plugin::Core::Download> candidate */Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/dist/foo-1.00.tar.gz # Alien::Build::Plugin::Core::Download> setting version based on archive to 1.00 # Alien::Build::Plugin::Core::Download> downloaded foo-1.00.tar.gz ok 1 ok 2 - tarball downloaded # filename = /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/dist/foo-1.00.tar.gz ok 3 - content of file is the same 1..3 } ok 3 - prefer property { ok 1 - default (true) { ok 1 - alienfile compiles ok 2 - loaded Prefer::SortVersions exactly once 1..2 } ok 2 - false { ok 1 - alienfile compiles ok 2 - didn't load Prefer::SortVersions 1..2 } ok 3 - code reference { ok 1 - alienfile compiles ok 2 1..2 } 1..3 } 1..3 ok t/alien_build_plugin_extract_archivetar.t ............ ok 1 - available { ok 1 - zip { ok 1 1..1 } ok 2 - tar { ok 1 1..1 } ok 3 - tar.gz { ok 1 - has it { # has_it = 1 ok 1 1..1 } ok 2 - does not { # has_it = 0 ok 1 1..1 } 1..2 } ok 4 - tar.bz2 { ok 1 - has it { # TODO detection in Archive::Tar is sometimes broken # has_it = 1 ok 1 # 1..1 } ok 2 - does not { # TODO detection in Archive::Tar is sometimes broken # has_it = 0 ok 1 # 1..1 } 1..2 } 1..4 } ok 2 - archive { ok 1 - with extension tar { ok 1 ok 2 - directory created # dir = /private/tmp/G7w70kenVo/root/build_baab/foo-1.00 ok 3 - configure exists ok 4 - foo.c exists 1..4 } ok 2 - with extension tar.bz2 { ok 1 ok 2 - directory created # dir = /private/tmp/8Kpe3WwGB2/root/build_15LH/foo-1.00 ok 3 - configure exists ok 4 - foo.c exists 1..4 } ok 3 - with extension tar.gz { ok 1 ok 2 - directory created # dir = /private/tmp/AXndjrJCMh/root/build_AXrF/foo-1.00 ok 3 - configure exists ok 4 - foo.c exists 1..4 } 1..3 } ok 3 - archive with pax_global_header { ok 1 - alienfile compiles ok 2 - alien extraction ok 3 - file content matches 1..3 } 1..3 ok t/alien_build_plugin_extract_archivezip.t ............ ok 1 - available { ok 1 - tar is always false ok 2 - with Archive::Zip { ok 1 1..1 } ok 3 - with Archive::Zip { # Devel::Hide hides Archive/Zip.pm ok 1 1..1 } 1..3 } ok 2 - archive { ok 1 - with extension zip { 1..0 # SKIP configuration does not support zip } 1..1 } 1..2 ok t/alien_build_plugin_extract_commandline.t ........... ok 1 - archive { ok 1 - command probe { # gzip = gzip # bzip2 = bzip2 # xz = undef # tar = bsdtar # unzip = unzip ok 1 1..1 } ok 2 - with extension tar { # archive = /tmp/YiXYVDulWz/foo-1.00.tar ok 1 - no error from extract # Alien::Build::Plugin::Extract::CommandLine> + bsdtar -xf /tmp/YiXYVDulWz/foo-1.00.tar ok 2 - directory created # dir = /private/tmp/dO9g8qxl39/root/build_D3PT/foo-1.00 ok 3 - configure exists ok 4 - foo.c exists 1..4 } ok 3 - with extension tar.Z { # archive = /tmp/f3sQrn2M01/foo-1.00.tar.Z ok 1 - no error from extract # Alien::Build::Plugin::Extract::CommandLine> copy /tmp/f3sQrn2M01/foo-1.00.tar.Z => /tmp/f3sQrn2M01/xfoo-1.00.tar.Z # Alien::Build::Plugin::Extract::CommandLine> + gzip -d /tmp/f3sQrn2M01/xfoo-1.00.tar.Z # Alien::Build::Plugin::Extract::CommandLine> move /tmp/f3sQrn2M01/xfoo-1.00.tar => /tmp/f3sQrn2M01/foo-1.00.tar # Alien::Build::Plugin::Extract::CommandLine> + bsdtar -xf /tmp/f3sQrn2M01/foo-1.00.tar ok 2 - directory created # dir = /private/tmp/dO9g8qxl39/root/build_H44b/foo-1.00 ok 3 - configure exists ok 4 - foo.c exists 1..4 } ok 4 - with extension tar.bz2 { # archive = /tmp/qt8HSdjAJk/foo-1.00.tar.bz2 ok 1 - no error from extract # Alien::Build::Plugin::Extract::CommandLine> + bsdtar -xf /tmp/qt8HSdjAJk/foo-1.00.tar.bz2 ok 2 - directory created # dir = /private/tmp/dO9g8qxl39/root/build_Y2Sh/foo-1.00 ok 3 - configure exists ok 4 - foo.c exists 1..4 } ok 5 - with extension tar.gz { # archive = /tmp/c6V_FGYhh6/foo-1.00.tar.gz ok 1 - no error from extract # Alien::Build::Plugin::Extract::CommandLine> + bsdtar -xf /tmp/c6V_FGYhh6/foo-1.00.tar.gz ok 2 - directory created # dir = /private/tmp/dO9g8qxl39/root/build_jvdD/foo-1.00 ok 3 - configure exists ok 4 - foo.c exists 1..4 } ok 6 - with extension tar.xz { # archive = /tmp/yJoIBd4kdV/foo-1.00.tar.xz ok 1 - no error from extract # Alien::Build::Plugin::Extract::CommandLine> + bsdtar -xf /tmp/yJoIBd4kdV/foo-1.00.tar.xz ok 2 - directory created # dir = /private/tmp/dO9g8qxl39/root/build_8tPZ/foo-1.00 ok 3 - configure exists ok 4 - foo.c exists 1..4 } ok 7 - with extension zip { # archive = /tmp/hg7hj4JWIH/foo-1.00.zip ok 1 - no error from extract # Alien::Build::Plugin::Extract::CommandLine> + unzip /tmp/hg7hj4JWIH/foo-1.00.zip # Archive: /tmp/hg7hj4JWIH/foo-1.00.zip # extracting: configure # inflating: foo.c ok 2 - directory created # dir = /tmp/dO9g8qxl39/root/build_CI4M ok 3 - configure exists ok 4 - foo.c exists 1..4 } 1..7 } ok 2 - archive with pax_global_header { ok 1 - alienfile compiles ok 2 - alien extraction ok 3 - file content matches 1..3 } 1..2 ok t/alien_build_plugin_extract_commandline__tar_can.t .. ok 1 - tar can { ok 1 - can read from with readonly $_ 1..1 } 1..1 ok t/alien_build_plugin_extract_directory.t ............. ok 1 - handles { ok 1 ok 2 1..2 } ok 2 - available { ok 1 ok 2 1..2 } ok 3 - basic { ok 1 - directory created # dir = /tmp/PByFKAlulp/root/build_pnGy ok 2 - configure exists ok 3 - foo.c exists 1..3 } 1..3 ok t/alien_build_plugin_extract_negotiate.t ............. ok 1 - basic { # Alien::Build::Plugin::Core::Download> downloaded foo-1.00.tar ok 1 - extracted to directory # dir = /private/tmp/4ANVcuEw4Y/root/build_mppx/foo-1.00 ok 2 - created file configure ok 3 - content matches ok 4 - created file foo.c ok 5 - content matches 1..5 } ok 2 - picks { ok 1 - we have a pick # the pick is: Extract::ArchiveTar ok 2 - we have a pick # the pick is: Extract::ArchiveTar ok 3 - we have a pick # the pick is: Extract::ArchiveTar ok 4 - we have a pick # the pick is: Extract::ArchiveZip ok 5 - we have a pick # the pick is: Extract::Directory ok 6 - tar { ok 1 - plain { ok 1 1..1 } ok 2 - tar.gz { # tar.gz is available = 1 ok 1 - when avail # tar.gz is available = ok 2 - when not 1..2 } 1..2 } ok 7 - zip { ok 1 - nada { ok 1 1..1 } ok 2 - just Archive::Zip { ok 1 1..1 } ok 3 - just info zip { ok 1 1..1 } ok 4 - both { ok 1 1..1 } 1..4 } 1..7 } 1..2 ok t/alien_build_plugin_fetch_curlcommand.t ............. ok 1 - fetch from http { ok 1 - alienfile compiles ok 2 - alien install type is share ok 3 - directory listing { # Alien::Build::Plugin::Fetch::CurlCommand> + /bin/curl -L -f -o content -w @writeout http://localhost/corpus/alien_build_plugin_fetch_curlcommand/dir/html_test.html ok 1 - list 1..1 } ok 4 - file { # Alien::Build::Plugin::Fetch::CurlCommand> + /bin/curl -L -f -o content -w @writeout http://localhost/corpus/alien_build_plugin_fetch_curlcommand/dir/foo-1.01.tar ok 1 - file meta ok 2 - file content 1..2 } ok 5 - 404 { # Alien::Build::Plugin::Fetch::CurlCommand> + /bin/curl -L -f -o content -w @writeout http://localhost/corpus/alien_build_plugin_fetch_curlcommand/dir/bogus.html ok 1 - throws error # error is: error in curl fetch: curl: (22) The requested URL returned error: 404 Not Found at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/Plugin/Fetch/CurlCommand.pm line 170. 1..1 } 1..5 } 1..1 ok t/alien_build_plugin_fetch_httptiny.t ................ ok 1 - updates requires { ok 1 ok 2 # --- !!perl/hash:Alien::Build::Meta # around: # gather_ffi: !!perl/code '{ "DUMMY" }' # gather_share: !!perl/code '{ "DUMMY" }' # gather_system: !!perl/code '{ "DUMMY" }' # build_suffix: '' # class: Alien::Build::Auto::Blank0 # default_hook: # build_ffi: &1 !!perl/code '{ "DUMMY" }' # download: !!perl/code '{ "DUMMY" }' # gather_ffi: *1 # gather_share: &2 !!perl/code '{ "DUMMY" }' # gather_system: *2 # override: !!perl/code '{ "DUMMY" }' # filename: /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/blank/alienfile # hook: # fetch: # - !!perl/code '{ "DUMMY" }' # phase: any # prop: # arch: 1 # destdir_ffi_filter: '^dynamic' # local_source: 0 # network: 1 # platform: # compiler_type: unix # system_type: unix # start_url: http://example.test/ # require: # any: {} # share: # HTTP::Tiny: 0.044 # URI: 0 # system: {} 1..2 } ok 2 - use start_url { ok 1 - sets start_url { ok 1 - alienfile compiles ok 2 1..2 } ok 2 - uses start_url { ok 1 - alienfile compiles ok 2 1..2 } 1..2 } ok 3 - fetch { 1..0 # SKIP no httpd.json } 1..3 ok t/alien_build_plugin_fetch_local.t ................... ok 1 - basic { ok 1 - default { # --- # filename: foo-1.00.tar # path: /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/dist/foo-1.00.tar # tmp: 0 # type: file ok 1 - response hash ok 2 - path exists as file 1..2 } ok 2 - listing { # --- # list: # - filename: foo-1.00 # url: /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/dist/foo-1.00 # - filename: foo-1.00.tar # url: /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/dist/foo-1.00.tar # - filename: foo-1.00.tar.Z # url: /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/dist/foo-1.00.tar.Z # - filename: foo-1.00.tar.bz2 # url: /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/dist/foo-1.00.tar.bz2 # - filename: foo-1.00.tar.gz # url: /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/dist/foo-1.00.tar.gz # - filename: foo-1.00.tar.xz # url: /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/dist/foo-1.00.tar.xz # - filename: foo-1.00.zip # url: /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/dist/foo-1.00.zip # type: list ok 1 - response hash ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 1..8 } ok 3 - file { # --- # filename: foo-1.00.tar.gz # path: /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/dist/foo-1.00.tar.gz # tmp: 0 # type: file ok 1 - response hash ok 2 - path exists as file 1..2 } 1..3 } ok 2 - use start_url { ok 1 - sets start_url { ok 1 - alienfile compiles ok 2 1..2 } ok 2 - uses start_url { ok 1 - alienfile compiles ok 2 1..2 } 1..2 } ok 3 - uri { ok 1 - listing { # --- # list: # - filename: foo-1.00 # url: /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/dist/foo-1.00 # - filename: foo-1.00.tar # url: /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/dist/foo-1.00.tar # - filename: foo-1.00.tar.Z # url: /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/dist/foo-1.00.tar.Z # - filename: foo-1.00.tar.bz2 # url: /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/dist/foo-1.00.tar.bz2 # - filename: foo-1.00.tar.gz # url: /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/dist/foo-1.00.tar.gz # - filename: foo-1.00.tar.xz # url: /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/dist/foo-1.00.tar.xz # - filename: foo-1.00.zip # url: /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/dist/foo-1.00.zip # type: list ok 1 - response hash ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 1..8 } ok 2 - file { # --- # filename: foo-1.00.tar.gz # path: /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/dist/foo-1.00.tar.gz # tmp: 0 # type: file ok 1 - response hash ok 2 - path exists as file 1..2 } 1..2 } 1..3 ok t/alien_build_plugin_fetch_localdir.t ................ ok 1 - alienfile compiles # Alien::Build::Plugin::Core::Download> downloaded foo-1.00 ok 2 - did not throw exception ok 3 - download is a directory # download = /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/dist/foo-1.00 ok 4 - configure is a file ok 5 - foo.c is a file 1..5 ok t/alien_build_plugin_fetch_lwp.t ..................... ok 1 - updates requires { ok 1 # --- !!perl/hash:Alien::Build::Meta # around: # gather_ffi: !!perl/code '{ "DUMMY" }' # gather_share: !!perl/code '{ "DUMMY" }' # gather_system: !!perl/code '{ "DUMMY" }' # build_suffix: '' # class: Alien::Build::Auto::Blank0 # default_hook: # build_ffi: &1 !!perl/code '{ "DUMMY" }' # download: !!perl/code '{ "DUMMY" }' # gather_ffi: *1 # gather_share: &2 !!perl/code '{ "DUMMY" }' # gather_system: *2 # override: !!perl/code '{ "DUMMY" }' # filename: /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/blank/alienfile # hook: # fetch: # - !!perl/code '{ "DUMMY" }' # phase: any # prop: # arch: 1 # destdir_ffi_filter: '^dynamic' # local_source: 0 # network: 1 # platform: # compiler_type: unix # system_type: unix # start_url: file://localhost/ # require: # any: {} # share: # LWP::UserAgent: 0 # system: {} 1..1 } ok 2 - use start_url { ok 1 - sets start_url { ok 1 - alienfile compiles ok 2 1..2 } ok 2 - uses start_url { ok 1 - alienfile compiles ok 2 1..2 } 1..2 } ok 3 - fetch { ok 1 - with http { 1..0 # SKIP no httpd.json } ok 2 - with ftp { 1..0 # SKIP no ftpd.json } ok 3 - with file { ok 1 - listing { ok 1 1..1 } ok 2 - file { # url = file:///Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/dist/foo-1.00.tar.gz ok 1 1..1 } ok 3 - not found { # url = file:///Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/dist/bogus.tar.gz ok 1 1..1 } 1..3 } 1..3 } 1..3 ok t/alien_build_plugin_fetch_netftp.t .................. ok 1 - updates requires { ok 1 ok 2 # --- !!perl/hash:Alien::Build::Meta # around: # gather_ffi: !!perl/code '{ "DUMMY" }' # gather_share: !!perl/code '{ "DUMMY" }' # gather_system: !!perl/code '{ "DUMMY" }' # build_suffix: '' # class: Alien::Build::Auto::Blank0 # default_hook: # build_ffi: &1 !!perl/code '{ "DUMMY" }' # download: !!perl/code '{ "DUMMY" }' # gather_ffi: *1 # gather_share: &2 !!perl/code '{ "DUMMY" }' # gather_system: *2 # override: !!perl/code '{ "DUMMY" }' # filename: /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/blank/alienfile # hook: # fetch: # - !!perl/code '{ "DUMMY" }' # phase: any # prop: # arch: 1 # destdir_ffi_filter: '^dynamic' # local_source: 0 # network: 1 # platform: # compiler_type: unix # system_type: unix # start_url: ftp://localhost/ # require: # any: {} # share: # Net::FTP: 0 # URI: 0 # system: {} 1..2 } ok 2 - use start_url { ok 1 - sets start_url { ok 1 - alienfile compiles ok 2 1..2 } ok 2 - uses start_url { ok 1 - alienfile compiles ok 2 1..2 } 1..2 } ok 3 - fetch { 1..0 # SKIP no ftpd.json } 1..3 ok t/alien_build_plugin_fetch_wget.t .................... ok 1 - fetch from http { ok 1 - alienfile compiles ok 2 - alien install type is share ok 3 - html { # Alien::Build::Plugin::Fetch::Wget> + /bin/wget -k --content-disposition -S http://localhost/corpus/alien_build_plugin_fetch_wget/dir/html_test.html ok 1 - list 1..1 } ok 4 - file { # Alien::Build::Plugin::Fetch::Wget> + /bin/wget -k --content-disposition -S http://localhost/corpus/alien_build_plugin_fetch_wget/dir/foo-1.01.tar ok 1 - file meta ok 2 - file content 1..2 } ok 5 - 404 { # Alien::Build::Plugin::Fetch::Wget> + /bin/wget -k --content-disposition -S http://localhost/corpus/alien_build_plugin_fetch_wget/dir/bogus.html ok 1 - throws error # error is: error in wget fetch: Converted links in 0 files in 0 seconds. at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/Plugin/Fetch/Wget.pm line 84. 1..1 } 1..5 } 1..1 ok t/alien_build_plugin_gather_isolatedynamic.t ......... ok 1 - basic { ok 1 - less indirect { # Alien::Build> single file, assuming archive # in build # Alien::Build::Plugin::Gather::IsolateDynamic> Isolating dynamic libraries ... # Alien::Build::Plugin::Gather::IsolateDynamic> move bin/foo.dll => dynamic/foo.dll # Alien::Build::Plugin::Gather::IsolateDynamic> move lib/foo.dll.a => dynamic/foo.dll.a # Alien::Build::Plugin::Gather::IsolateDynamic> move lib/libfoo.bundle => dynamic/libfoo.bundle # Alien::Build::Plugin::Gather::IsolateDynamic> move lib/libfoo.dylib => dynamic/libfoo.dylib # Alien::Build::Plugin::Gather::IsolateDynamic> move lib/libfoo.la => dynamic/libfoo.la # Alien::Build::Plugin::Gather::IsolateDynamic> Done! # Alien::Build::Plugin::Core::Legacy> adding legacy hash to config # Alien::Build::Plugin::Core::Gather> mkdir -p /tmp/lGPy1pcQI5/stage/_alien ok 1 - correct: lib/libfoo.a ok 2 - correct: bin/foo ok 3 - correct: bin/foo.exe ok 4 - moved: lib/libfoo.dylib ok 5 - correct: dynamic/libfoo.dylib ok 6 - moved: lib/libfoo.bundle ok 7 - correct: dynamic/libfoo.bundle ok 8 - moved: lib/libfoo.la ok 9 - correct: dynamic/libfoo.la ok 10 - moved: lib/foo.dll.a ok 11 - correct: dynamic/foo.dll.a 1..11 } ok 2 - destdir { # Alien::Build> single file, assuming archive # in build # Alien::Build::Plugin::Gather::IsolateDynamic> Isolating dynamic libraries ... # Alien::Build::Plugin::Gather::IsolateDynamic> move bin/foo.dll => dynamic/foo.dll # Alien::Build::Plugin::Gather::IsolateDynamic> move lib/foo.dll.a => dynamic/foo.dll.a # Alien::Build::Plugin::Gather::IsolateDynamic> move lib/libfoo.bundle => dynamic/libfoo.bundle # Alien::Build::Plugin::Gather::IsolateDynamic> move lib/libfoo.dylib => dynamic/libfoo.dylib # Alien::Build::Plugin::Gather::IsolateDynamic> move lib/libfoo.la => dynamic/libfoo.la # Alien::Build::Plugin::Gather::IsolateDynamic> Done! # Alien::Build::Plugin::Core::Legacy> adding legacy hash to config # Alien::Build::Plugin::Core::Gather> mirror /tmp/d1vjZCreYZ/root/destdir_4Pen/tmp/d1vjZCreYZ/prefix => /tmp/d1vjZCreYZ/stage # Alien::Build::Util> mkdir -p /tmp/d1vjZCreYZ/stage/bin # Alien::Build::Util> Alien::Build> cp /tmp/d1vjZCreYZ/root/destdir_4Pen/tmp/d1vjZCreYZ/prefix/bin/foo /tmp/d1vjZCreYZ/stage/bin/foo # Alien::Build::Util> Alien::Build> cp /tmp/d1vjZCreYZ/root/destdir_4Pen/tmp/d1vjZCreYZ/prefix/bin/foo.exe /tmp/d1vjZCreYZ/stage/bin/foo.exe # Alien::Build::Util> mkdir -p /tmp/d1vjZCreYZ/stage/dynamic # Alien::Build::Util> Alien::Build> cp /tmp/d1vjZCreYZ/root/destdir_4Pen/tmp/d1vjZCreYZ/prefix/dynamic/foo.dll /tmp/d1vjZCreYZ/stage/dynamic/foo.dll # Alien::Build::Util> Alien::Build> cp /tmp/d1vjZCreYZ/root/destdir_4Pen/tmp/d1vjZCreYZ/prefix/dynamic/foo.dll.a /tmp/d1vjZCreYZ/stage/dynamic/foo.dll.a # Alien::Build::Util> Alien::Build> cp /tmp/d1vjZCreYZ/root/destdir_4Pen/tmp/d1vjZCreYZ/prefix/dynamic/libfoo.bundle /tmp/d1vjZCreYZ/stage/dynamic/libfoo.bundle # Alien::Build::Util> Alien::Build> cp /tmp/d1vjZCreYZ/root/destdir_4Pen/tmp/d1vjZCreYZ/prefix/dynamic/libfoo.dylib /tmp/d1vjZCreYZ/stage/dynamic/libfoo.dylib # Alien::Build::Util> Alien::Build> cp /tmp/d1vjZCreYZ/root/destdir_4Pen/tmp/d1vjZCreYZ/prefix/dynamic/libfoo.la /tmp/d1vjZCreYZ/stage/dynamic/libfoo.la # Alien::Build::Util> mkdir -p /tmp/d1vjZCreYZ/stage/lib # Alien::Build::Util> Alien::Build> cp /tmp/d1vjZCreYZ/root/destdir_4Pen/tmp/d1vjZCreYZ/prefix/lib/libfoo.a /tmp/d1vjZCreYZ/stage/lib/libfoo.a # Alien::Build::Plugin::Core::Gather> mkdir -p /tmp/d1vjZCreYZ/stage/_alien ok 1 - correct: lib/libfoo.a ok 2 - correct: bin/foo ok 3 - correct: bin/foo.exe ok 4 - moved: lib/libfoo.dylib ok 5 - correct: dynamic/libfoo.dylib ok 6 - moved: lib/libfoo.bundle ok 7 - correct: dynamic/libfoo.bundle ok 8 - moved: lib/libfoo.la ok 9 - correct: dynamic/libfoo.la ok 10 - moved: lib/foo.dll.a ok 11 - correct: dynamic/foo.dll.a 1..11 } 1..2 } 1..1 ok t/alien_build_plugin_meta.t .......................... ok 1 - basic { ok 1 - Alien::Build::PluginMeta=HASH->isa('Alien::Build::PluginMeta') 1..1 } 1..1 ok t/alien_build_plugin_pkgconfig_commandline.t ......... skipped: test requires pkgconf or pkg-config t/alien_build_plugin_pkgconfig_libpkgconf.t .......... ok 1 - available { ok 1 - new enough { ok 1 1..1 } ok 2 - too old! { ok 1 1..1 } 1..2 } ok 2 - Loaded PkgConfig::LibPkgConf::Client # inc=/Users/fly2400/cpanfly-5.24/var/megalib/PkgConfig/LibPkgConf/Client.pm ok 3 - Loaded PkgConfig::LibPkgConf::Util # inc=/Users/fly2400/cpanfly-5.24/var/megalib/PkgConfig/LibPkgConf/Util.pm # PKG_CONFIG_PATH=/Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/lib/pkgconfig ok 4 - system not available { # Alien::Build> error in probe (will do a share install): package bogus not found at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/Plugin/PkgConfig/LibPkgConf.pm line 69. # Alien::Build> Don't panic, we will attempt a share build from source if possible. # Alien::Build> Do not file a bug unless you expected a system install to succeed. ok 1 1..1 } ok 5 - system available, wrong version { # Alien::Build> error in probe (will do a share install): package foo is not recent enough at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/Plugin/PkgConfig/LibPkgConf.pm line 75. # Alien::Build> Don't panic, we will attempt a share build from source if possible. # Alien::Build> Do not file a bug unless you expected a system install to succeed. ok 1 1..1 } ok 6 - system available, okay { # ok 1 # Alien::Build::Plugin::Core::Legacy> adding legacy hash to config # Alien::Build::Plugin::Core::Gather> mkdir -p /tmp/NFgbwkole7/stage/_alien ok 2 ok 3 1..3 } ok 7 - system multiple { ok 1 - all found in system { ok 1 - alienfile compiles ok 2 - alien install type is system ok 3 - alien builds okay # Alien::Build::Plugin::Core::Legacy> adding legacy hash to config # Alien::Build::Plugin::Core::Gather> mkdir -p /tmp/UCGh40EXIJ/stage/_alien # --- # alien_build_version: 1.37 # alt: # xor: # cflags: '-I/test/include/xor ' # cflags_static: '-I/test/include/xor -DXOR_STATIC ' # libs: '-L/test/lib -lxor ' # libs_static: '-L/test/lib -lxor -lxor1 ' # version: 4.2.1 # xor-chillout: # cflags: '-I/test/include/xor ' # cflags_static: '-I/test/include/xor -DXOR_STATIC ' # libs: '-L/test/lib -lxor-chillout ' # libs_static: '-L/test/lib -lxor-chillout ' # version: 4.2.2 # cflags: '-I/test/include/xor ' # cflags_static: '-I/test/include/xor -DXOR_STATIC ' # distdir: /tmp/UCGh40EXIJ/prefix # install_type: system # legacy: # finished_installing: 1 # install_type: system # name: xor # original_prefix: /tmp/UCGh40EXIJ/prefix # version: 4.2.1 # libs: '-L/test/lib -lxor ' # libs_static: '-L/test/lib -lxor -lxor1 ' # prefix: /tmp/UCGh40EXIJ/prefix # version: 4.2.1 ok 4 1..4 } 1..1 } ok 8 - prereqs { ok 1 - are specified when user asks for plugin directly { ok 1 - alienfile compiles ok 2 - prereqs 1..2 } ok 2 - minimum version requires util module { ok 1 - alienfile compiles ok 2 - prereqs 1..2 } ok 3 - are not specified when user asks for plugin IN-directly { # Alien::Build::Plugin::PkgConfig::Negotiate> Using PkgConfig plugin: PkgConfig::LibPkgConf ok 1 - alienfile compiles ok 2 - prereqs 1..2 } 1..3 } ok 9 - set env { ok 1 - alienfile compiles ok 2 - alien builds okay # Alien::Build::Plugin::Core::Download> downloaded foo-1.00.tar # Use of uninitialized value $ENV{"PKG_CONFIG"} in concatenation (.) or string at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/t/alien_build_plugin_pkgconfig_libpkgconf.t line 242. # Alien::Build::Auto::Rxmtf8::Alienfile> PKG_CONFIG = # Alien::Build::Plugin::Core::Legacy> adding legacy hash to config # Alien::Build::Plugin::Core::Gather> mkdir -p /tmp/rEFA1xmtAf/stage/_alien 1..2 } 1..9 ok t/alien_build_plugin_pkgconfig_makestatic.t .......... ok 1 - recursive { # Alien::Build> error in probe (will do a share install): package foo1 not found at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/Plugin/PkgConfig/PP.pm line 76. # Alien::Build> Don't panic, we will attempt a share build from source if possible. # Alien::Build> Do not file a bug unless you expected a system install to succeed. # Alien::Build> single file, assuming archive # Alien::Build::Plugin::PkgConfig::MakeStatic> converting /private/tmp/Ahl_VyVRYg/stage/lib/pkgconfig/bar1.pc to static # Alien::Build::Plugin::PkgConfig::MakeStatic> converting /private/tmp/Ahl_VyVRYg/stage/lib/pkgconfig/foo1.pc to static # Alien::Build::Plugin::Core::Legacy> adding legacy hash to config # Alien::Build::Plugin::Core::Gather> mkdir -p /tmp/Ahl_VyVRYg/stage/_alien ok 1 1..1 } 1..1 ok t/alien_build_plugin_pkgconfig_negotiate.t ........... ok 1 - pick { ok 1 - has a pick # pick = PkgConfig::LibPkgConf 1..1 } ok 2 - override { ok 1 - PkgConfig::PP { ok 1 - minimum_version = undef { ok 1 - alienfile compiles # Alien::Build::Plugin::PkgConfig::Negotiate> Using PkgConfig plugin: PkgConfig::PP ok 2 - arguments to subplugin are correct 1..2 } ok 2 - minimum_version = 1.2.3 { ok 1 - alienfile compiles # Alien::Build::Plugin::PkgConfig::Negotiate> Using PkgConfig plugin: PkgConfig::PP ok 2 - arguments to subplugin are correct 1..2 } 1..2 } ok 2 - PkgConfig::LibPkgConf { ok 1 - minimum_version = undef { ok 1 - alienfile compiles # Alien::Build::Plugin::PkgConfig::Negotiate> Using PkgConfig plugin: PkgConfig::LibPkgConf ok 2 - arguments to subplugin are correct 1..2 } ok 2 - minimum_version = 1.2.3 { ok 1 - alienfile compiles # Alien::Build::Plugin::PkgConfig::Negotiate> Using PkgConfig plugin: PkgConfig::LibPkgConf ok 2 - arguments to subplugin are correct 1..2 } 1..2 } ok 3 - PkgConfig::CommandLine { ok 1 - minimum_version = undef { ok 1 - alienfile compiles # Alien::Build::Plugin::PkgConfig::Negotiate> Using PkgConfig plugin: PkgConfig::CommandLine # Use of uninitialized value $string in pattern match (m//) at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/Interpolate.pm line 149. # Use of uninitialized value $string in pattern match (m//) at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/Interpolate.pm line 149. # Use of uninitialized value $string in pattern match (m//) at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/Interpolate.pm line 149. # Use of uninitialized value $string in pattern match (m//) at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/Interpolate.pm line 149. # Use of uninitialized value $string in pattern match (m//) at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/Interpolate.pm line 149. # Use of uninitialized value $string in pattern match (m//) at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/Interpolate.pm line 149. # Use of uninitialized value $string in pattern match (m//) at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/Interpolate.pm line 149. # Use of uninitialized value $string in pattern match (m//) at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/Interpolate.pm line 149. # Use of uninitialized value $string in pattern match (m//) at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/Interpolate.pm line 149. # Use of uninitialized value $string in pattern match (m//) at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/Interpolate.pm line 149. # Use of uninitialized value $string in pattern match (m//) at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/Interpolate.pm line 149. # Use of uninitialized value $string in pattern match (m//) at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/Interpolate.pm line 149. # Use of uninitialized value $string in pattern match (m//) at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/Interpolate.pm line 149. ok 2 - arguments to subplugin are correct 1..2 } ok 2 - minimum_version = 1.2.3 { ok 1 - alienfile compiles # Alien::Build::Plugin::PkgConfig::Negotiate> Using PkgConfig plugin: PkgConfig::CommandLine # Use of uninitialized value $string in pattern match (m//) at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/Interpolate.pm line 149. # Use of uninitialized value $string in pattern match (m//) at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/Interpolate.pm line 149. # Use of uninitialized value $string in pattern match (m//) at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/Interpolate.pm line 149. # Use of uninitialized value $string in pattern match (m//) at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/Interpolate.pm line 149. # Use of uninitialized value $string in pattern match (m//) at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/Interpolate.pm line 149. # Use of uninitialized value $string in pattern match (m//) at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/Interpolate.pm line 149. # Use of uninitialized value $string in pattern match (m//) at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/Interpolate.pm line 149. # Use of uninitialized value $string in pattern match (m//) at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/Interpolate.pm line 149. # Use of uninitialized value $string in pattern match (m//) at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/Interpolate.pm line 149. # Use of uninitialized value $string in pattern match (m//) at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/Interpolate.pm line 149. # Use of uninitialized value $string in pattern match (m//) at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/Interpolate.pm line 149. # Use of uninitialized value $string in pattern match (m//) at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/Interpolate.pm line 149. # Use of uninitialized value $string in pattern match (m//) at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/Interpolate.pm line 149. # Use of uninitialized value $string in pattern match (m//) at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/Interpolate.pm line 149. ok 2 - arguments to subplugin are correct 1..2 } 1..2 } 1..3 } ok 3 - list of pkg_name { # Alien::Build::Plugin::PkgConfig::Negotiate> Using PkgConfig plugin: PkgConfig::LibPkgConf ok 1 - alienfile compiles ok 2 - passes pkg_name correctly ok 3 - sets prereq 1..3 } 1..3 ok t/alien_build_plugin_pkgconfig_negotiate__pick.t ..... ok 1 - LibPkgConf { ok 1 - installed { ok 1 - new enough { ok 1 1..1 } ok 2 - not new enough { ok 1 1..1 } 1..2 } ok 2 - not installed { # Devel::Hide hides PkgConfig/LibPkgConf.pm ok 1 1..1 } 1..2 } ok 2 - CommandLine { ok 1 - no command line { # which: undef # which: pkgconf N/A # which: pkg-config N/A ok 1 1..1 } ok 2 - pkg-config { # which: undef # which: pkgconf N/A # which: pkg-config => /usr/bin/pkg-config ok 1 1..1 } ok 3 - pkgconf { # which: undef # which: pkgconf => /usr/bin/pkgconf ok 1 1..1 } ok 4 - PKG_CONFIG { # which: foo-pkg-config => /usr/bin/foo-pkg-config ok 1 1..1 } ok 5 - PP { ok 1 - 64 bit solaris { # which: undef # which: pkgconf N/A # which: pkg-config => /usr/bin/pkg-config ok 1 1..1 } ok 2 - PP is fallback { # which: undef # which: pkgconf N/A # which: pkg-config N/A ok 1 1..1 } 1..2 } 1..5 } 1..2 ok t/alien_build_plugin_pkgconfig_pp.t .................. ok 1 - available { ok 1 - new enough { ok 1 1..1 } ok 2 - too old! { ok 1 1..1 } 1..2 } # PKG_CONFIG_PATH=/Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/lib/pkgconfig ok 2 - system not available { # Alien::Build> error in probe (will do a share install): package bogus not found at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/Plugin/PkgConfig/PP.pm line 76. # Alien::Build> Don't panic, we will attempt a share build from source if possible. # Alien::Build> Do not file a bug unless you expected a system install to succeed. ok 1 1..1 } ok 3 - system available, wrong version { # Alien::Build> error in probe (will do a share install): package foo is not recent enough at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/Plugin/PkgConfig/PP.pm line 83. # Alien::Build> Don't panic, we will attempt a share build from source if possible. # Alien::Build> Do not file a bug unless you expected a system install to succeed. ok 1 1..1 } ok 4 - system available, okay { # ok 1 # Alien::Build::Plugin::Core::Legacy> adding legacy hash to config # Alien::Build::Plugin::Core::Gather> mkdir -p /tmp/ShOwlicxHl/stage/_alien ok 2 # cflags_static = -fPIC -I/test/include/foo -DFOO_STATIC ok 3 1..3 } ok 5 - system multiple { ok 1 - all found in system { ok 1 - alienfile compiles ok 2 - alien install type is system ok 3 - alien builds okay # Alien::Build::Plugin::Core::Legacy> adding legacy hash to config # Alien::Build::Plugin::Core::Gather> mkdir -p /tmp/BHl8DdFv_q/stage/_alien # --- # alien_build_version: 1.37 # alt: # xor: # cflags: '-I/test/include/xor ' # cflags_static: '-I/test/include/xor -DXOR_STATIC ' # libs: '-L/test/lib -lxor ' # libs_static: '-L/test/lib -lxor -lxor1 ' # version: 4.2.1 # xor-chillout: # cflags: '-I/test/include/xor ' # cflags_static: '-I/test/include/xor -DXOR_STATIC ' # libs: '-L/test/lib -lxor-chillout ' # libs_static: '-L/test/lib -lxor-chillout ' # version: 4.2.2 # cflags: '-I/test/include/xor ' # cflags_static: '-I/test/include/xor -DXOR_STATIC ' # distdir: /tmp/BHl8DdFv_q/prefix # install_type: system # legacy: # finished_installing: 1 # install_type: system # name: xor # original_prefix: /tmp/BHl8DdFv_q/prefix # version: 4.2.1 # libs: '-L/test/lib -lxor ' # libs_static: '-L/test/lib -lxor -lxor1 ' # prefix: /tmp/BHl8DdFv_q/prefix # version: 4.2.1 ok 4 1..4 } 1..1 } ok 6 - prereqs { ok 1 - are specified when user asks for plugin directly { ok 1 - alienfile compiles ok 2 - prereqs 1..2 } ok 2 - are not specified when user asks for plugin IN-directly { # Alien::Build::Plugin::PkgConfig::Negotiate> Using PkgConfig plugin: PkgConfig::PP ok 1 - alienfile compiles ok 2 - prereqs 1..2 } 1..2 } ok 7 - set env { ok 1 - alienfile compiles ok 2 - alien builds okay # Alien::Build::Plugin::Core::Download> downloaded foo-1.00.tar # Alien::Build::Auto::Ipsaf6::Alienfile> PKG_CONFIG = ppkg-config # Alien::Build::Plugin::Core::Legacy> adding legacy hash to config # Alien::Build::Plugin::Core::Gather> mkdir -p /tmp/EUips509af/stage/_alien 1..2 } 1..7 ok t/alien_build_plugin_prefer_badversion.t ............. ok 1 - compiles okay { ok 1 - alienfile compiles 1..1 } ok 2 - filter is required { ok 1 1..1 } ok 3 - filters out string version { ok 1 - alienfile compiles ok 2 - alien download ok 3 1..3 } ok 4 - filters out list version { ok 1 - alienfile compiles ok 2 - alien download ok 3 1..3 } ok 5 - filters out code ref { ok 1 - alienfile compiles ok 2 - alien download ok 3 1..3 } 1..5 ok t/alien_build_plugin_prefer_sortversions.t ........... ok 1 - updates requires { ok 1 # --- !!perl/hash:Alien::Build::Meta # around: # gather_ffi: !!perl/code '{ "DUMMY" }' # gather_share: !!perl/code '{ "DUMMY" }' # gather_system: !!perl/code '{ "DUMMY" }' # build_suffix: '' # class: Alien::Build::Auto::Blank0 # default_hook: # build_ffi: &1 !!perl/code '{ "DUMMY" }' # download: !!perl/code '{ "DUMMY" }' # gather_ffi: *1 # gather_share: &2 !!perl/code '{ "DUMMY" }' # gather_system: *2 # override: !!perl/code '{ "DUMMY" }' # filename: /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/corpus/blank/alienfile # hook: # prefer: # - !!perl/code '{ "DUMMY" }' # phase: any # prop: # arch: 1 # destdir_ffi_filter: '^dynamic' # local_source: 0 # network: 1 # platform: # compiler_type: unix # system_type: unix # require: # any: {} # share: # Sort::Versions: 0 # system: {} 1..1 } ok 2 - prefer { ok 1 - default settings { # --- # list: # - filename: abc-2.3.4.tar.gz # url: http://example.test/foo/bar/abc-2.3.4.tar.gz # version: 2.3.4 # - filename: xyz-1.0.0.tar.gz # url: http://example.test/foo/bar/xyz-1.0.0.tar.gz # version: 1.0.0 # - filename: roger-0.0.0.tar.gz # url: http://example.test/foo/bar/roger-0.0.0.tar.gz # version: 0.0.0 # type: list ok 1 1..1 } ok 2 - filter { # --- # list: # - filename: abc-2.3.4.tar.gz # url: http://example.test/foo/bar/abc-2.3.4.tar.gz # version: 2.3.4 # - filename: xyz-1.0.0.tar.gz # url: http://example.test/foo/bar/xyz-1.0.0.tar.gz # version: 1.0.0 # type: list ok 1 1..1 } ok 3 - version regex { # --- # list: # - filename: foo-5-bar-2.1.0.tar.gz # url: http://example.test/foo/bar/foo-5-bar-2.1.0.tar.gz # version: 2.1.0 # - filename: foo-10.0-bar-0.1.0.tar.gz # url: http://example.test/foo/bar/foo-10.0-bar-0.1.0.tar.gz # version: 0.1.0 # type: list ok 1 1..1 } 1..3 } 1..2 ok t/alien_build_plugin_probe_cbuilder.t ................ ok 1 - basic { ok 1 - alienfile compiles ok 2 - alien builds okay # Alien::Build::Plugin::Probe::CBuilder> trying: cflags=-I/usr/local/include libs=-L/usr/local/lib -lfoo # Alien::Build::Plugin::Core::Legacy> adding legacy hash to config # Alien::Build::Plugin::Core::Gather> mkdir -p /tmp/enAyH0b1_3/stage/_alien ok 3 - alien install type is system ok 4 - cflags ok 5 - libs ok 6 - options passed to new ok 7 ok 8 1..8 } ok 2 - program { # Alien::Build::Plugin::Probe::CBuilder> trying: cflags=-I/usr/local/include libs=-L/usr/local/lib -lfoo ok 1 - is system ok 2 - compiled with correct source 1..2 } ok 3 - program { ok 1 - alienfile compiles ok 2 - alien builds okay # Alien::Build::Plugin::Probe::CBuilder> trying: cflags=-I/usr/local/include libs=-L/usr/local/lib -lfoo # Alien::Build::Plugin::Core::Legacy> adding legacy hash to config # Alien::Build::Plugin::Core::Gather> mkdir -p /tmp/pb_98OUXzD/stage/_alien ok 3 - alien install type is system ok 4 - version matches 1..4 } ok 4 - fail { ok 1 - compile { ok 1 - alienfile compiles ok 2 - alien install type is system ok 3 1..3 } 1..1 } 1..4 ok t/alien_build_plugin_probe_commandline.t ............. ok 1 - basic existence { ok 1 - it is there { ok 1 - alienfile compiles ok 2 - is system 1..2 } ok 2 - it is not there { ok 1 - alienfile compiles # Alien::Build> error in probe (will do a share install): Command not found bar at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/Plugin/Probe/CommandLine.pm line 43. # Alien::Build> Don't panic, we will attempt a share build from source if possible. # Alien::Build> Do not file a bug unless you expected a system install to succeed. ok 2 - is share 1..2 } 1..2 } ok 2 - args { ok 1 - alienfile compiles ok 2 - is system ok 3 - was called ok 4 - args are passed in 1..4 } ok 3 - secondary { ok 1 - libs + command okay { ok 1 - alienfile compiles ok 2 ok 3 - run ok 4 - lib 1..4 } ok 2 - libs ok + command bad { ok 1 - alienfile compiles # Alien::Build> error in probe (will do a share install): Command not found bar at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/Plugin/Probe/CommandLine.pm line 43. # Alien::Build> Don't panic, we will attempt a share build from source if possible. # Alien::Build> Do not file a bug unless you expected a system install to succeed. ok 2 ok 3 - lib 1..3 } ok 3 - libs bad + command okay { ok 1 - alienfile compiles ok 2 ok 3 - run ok 4 - lib 1..4 } ok 4 - libs bad + command bad { ok 1 - alienfile compiles ok 2 ok 3 - run ok 4 - lib 1..4 } 1..4 } ok 4 - match + version { ok 1 - match good { ok 1 - alienfile compiles ok 2 1..2 } ok 2 - match bad { ok 1 - alienfile compiles # Alien::Build> error in probe (will do a share install): Command output did not match at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/Plugin/Probe/CommandLine.pm line 52. # Alien::Build> Don't panic, we will attempt a share build from source if possible. # Alien::Build> Do not file a bug unless you expected a system install to succeed. ok 2 1..2 } ok 3 - version found { ok 1 - alienfile compiles ok 2 ok 3 1..3 } ok 4 - version unfound { ok 1 - alienfile compiles ok 2 ok 3 1..3 } 1..4 } ok 5 - match_stderr + version_stderr { ok 1 - match good { ok 1 - alienfile compiles ok 2 1..2 } ok 2 - match bad { ok 1 - alienfile compiles # Alien::Build> error in probe (will do a share install): Command standard error did not match at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/Plugin/Probe/CommandLine.pm line 53. # Alien::Build> Don't panic, we will attempt a share build from source if possible. # Alien::Build> Do not file a bug unless you expected a system install to succeed. ok 2 1..2 } ok 3 - version found { ok 1 - alienfile compiles ok 2 ok 3 1..3 } ok 4 - version unfound { ok 1 - alienfile compiles ok 2 ok 3 1..3 } 1..4 } 1..5 ok t/alien_build_rc.t ................................... ok 1 - basic { # package is Alien::Build::rc # Alien::Build::rc> hey ok 1 - alienfile compiles ok 2 ok 3 1..3 } ok 2 - preload code ref { ok 1 - alienfile compiles ok 2 - Alien::Build::Meta=HASH->isa('Alien::Build::Meta') ok 3 - Alien::Build::Meta=HASH->isa('Alien::Build::Meta') 1..3 } 1..2 ok t/alien_build_tempdir.t .............................. ok 1 - root = /tmp/22bNHp1dsT/root ok 2 - cleanup on empty { ok 1 - tempdir = /tmp/22bNHp1dsT/root/foo_8_Kb ok 2 - directory removed 1..2 } ok 3 - do not cleanup non-empty { ok 1 - tempdir = /tmp/22bNHp1dsT/root/bar_nxLi ok 2 - directory not removed 1..2 } 1..3 ok t/alien_build_util.t ................................. ok 1 - dump { ok 1 # --- # a: 1 # b: 2 # --- # - 1 # - 2 1..1 } ok 2 - mirror { ok 1 - created source directory ok 2 - diff -r returned true ok 3 - dst bin/foomake is executable ok 4 - filter { # Alien::Build::Util> mkdir -p /tmp/mirror_dst_vIZc/bin # Alien::Build::Util> Alien::Build> cp /tmp/mirror_src_1qiN/bin/foomake /tmp/mirror_dst_vIZc/bin/foomake # Alien::Build::Util> mkdir -p /tmp/mirror_dst_vIZc/etc # Alien::Build::Util> Alien::Build> cp /tmp/mirror_src_1qiN/etc/foorc /tmp/mirror_dst_vIZc/etc/foorc # total 0 # drwxrwxr-x 3 fly2400 wheel 102 Mar 8 02:01 bin # drwxrwxr-x 3 fly2400 wheel 102 Mar 8 02:01 etc # # /tmp/mirror_dst_vIZc/bin: # total 8 # -rwxr-xr-x 1 fly2400 wheel 18 Mar 8 02:01 foomake # # /tmp/mirror_dst_vIZc/etc: # total 8 # -rw-rw-r-- 1 fly2400 wheel 18 Mar 8 02:01 foorc ok 1 - bin/foomake ok 2 - bin/foomake ok 3 - lib/libfoo.so.1.2.3 1..3 } 1..4 } ok 3 - destdir_prefix { # destdir_prefix = /tmp/6mxZYDTl8K/tmp/4Rjt7YPi9p ok 1 1..1 } 1..3 ok t/alien_build_version_basic.t ........................ ok 1 - basic { ok 1 - new { ok 1 - Alien::Build::Version::Basic=SCALAR->isa('Alien::Build::Version::Basic') ok 2 ok 3 1..3 } ok 2 - version { ok 1 - Alien::Build::Version::Basic=SCALAR->isa('Alien::Build::Version::Basic') ok 2 ok 3 1..3 } ok 3 - bad version { ok 1 1..1 } 1..3 } ok 2 - cmp method { ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 1..7 } ok 3 - cmp operator { ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 1..44 } 1..3 ok t/alien_role.t ....................................... ok 1 1..1 ok t/alienfile.t ........................................ Alien::Build::Plugin::PkgConfig::Negotiate> Using PkgConfig plugin: PkgConfig::LibPkgConf Alien::Build::Plugin::PkgConfig::Negotiate> Using PkgConfig plugin: PkgConfig::LibPkgConf Alien::Build::Plugin::PkgConfig::Negotiate> Using PkgConfig plugin: PkgConfig::LibPkgConf ok 1 - compile examples { ok 1 - bzip2.alienfile ok 2 - curl.alienfile ok 3 - dontpanic.alienfile ok 4 - gmake.alienfile ok 5 - openssl.alienfile ok 6 - xz-manual.alienfile ok 7 - xz.alienfile 1..7 } ok 2 - non struct alienfile { ok 1 - throws error # error = Can't use string ("bar::bar") as an ARRAY ref while "strict refs" in use at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/t/alienfile.t line 27. 1..1 } ok 3 - warnings alienfile { ok 1 # Use of uninitialized value $foo in string at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/t/alienfile.t line 42. 1..1 } ok 4 - plugin { ok 1 - basic { ok 1 1..1 } ok 2 - default argument { ok 1 1..1 } ok 3 - other arguments { ok 1 1..1 } ok 4 - sub package { ok 1 1..1 } ok 5 - negotiate { ok 1 1..1 } ok 6 - fully qualified class { ok 1 1..1 } 1..6 } ok 5 - probe { ok 1 - basic { ok 1 ok 2 1..2 } ok 2 - wrong block { ok 1 1..1 } 1..2 } ok 6 - download { ok 1 - basic { # Alien::Build> single file, assuming archive ok 1 1..1 } ok 2 - wrong block { ok 1 1..1 } 1..2 } ok 7 - fetch { ok 1 1..1 } ok 8 - decode { ok 1 1..1 } ok 9 - prefer { ok 1 1..1 } ok 10 - extract { ok 1 1..1 } ok 11 - build { ok 1 1..1 } ok 12 - build_ffi { # build_ffi is deprecated, use ffi { build ... } } instead at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/t/alienfile.t line 244. ok 1 1..1 } ok 13 - gather { ok 1 - configure { ok 1 1..1 } ok 2 - system + share { ok 1 ok 2 1..2 } ok 3 - system { ok 1 ok 2 1..2 } ok 4 - share { ok 1 ok 2 1..2 } ok 5 - share + gather_ffi { # gather_ffi is deprecated, use ffi { gather ... } } instead at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/t/alienfile.t line 313. ok 1 1..1 } ok 6 - share + ffi gather { ok 1 1..1 } ok 7 - nada { ok 1 ok 2 1..2 } 1..7 } ok 14 - prop { ok 1 1..1 } ok 15 - patch { ok 1 1..1 } ok 16 - patch_ffi { # patch_ffi is deprecated, use ffi { patch ... } } instead at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/t/alienfile.t line 371. ok 1 1..1 } ok 17 - ffi patch { ok 1 1..1 } ok 18 - arch { ok 1 - on { ok 1 1..1 } ok 2 - off { ok 1 1..1 } ok 3 - default { ok 1 1..1 } 1..3 } ok 19 - meta { ok 1 1..1 } ok 20 - test { ok 1 - basic { ok 1 - alienfile compiles ok 2 1..2 } ok 2 - alienfile compiles ok 3 - alienfile compiles ok 4 - not allowed in root block ok 5 - not allowed in configure block 1..5 } ok 21 - start_url { ok 1 - alienfile compiles ok 2 - build object 1..2 } 1..21 ok Can't exec "testaliendp758/foo.pl": No such file or directory at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Test/Alien.pm line 614. Can't exec "testalienUDw4h/foo.pl": No such file or directory at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Test/Alien.pm line 614. Can't exec "testalienBbXec/foo.pl": No such file or directory at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Test/Alien.pm line 614. Can't exec "testalienUXRJg/foo.pl": No such file or directory at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Test/Alien.pm line 614. Can't exec "testalien2Evaj/foo.pl": No such file or directory at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Test/Alien.pm line 614. Can't exec "testalienTQlhC/foo.pl": No such file or directory at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Test/Alien.pm line 614. Can't exec "testalienxN8S5/foo.pl": No such file or directory at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Test/Alien.pm line 614. Can't exec "testalienYxSit/foo.pl": No such file or directory at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Test/Alien.pm line 614. Can't exec "testalienFXw_7/foo.pl": No such file or directory at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Test/Alien.pm line 614. t/test_alien.t ....................................... ok 1 - alien_ok { ok 1 - as class { ok 1 - alien_ok with class ok 2 - bin_dir added to path 1..2 } ok 2 - as object { ok 1 - alien_ok with class ok 2 - bin_dir added to path 1..2 } ok 3 - alien_ok with instance ok 4 - alien_ok with bad class ok 5 - alien_ok with undef 1..5 } ok 2 - helper_ok { ok 1 - Alien::libfoo1 responds to: cflags libs dynamic_libs bin_dir ok 2 - helper foo1 exists ok 3 - something else ok 4 - default test name ok 5 - custom name ok 6 - failed test 1..6 } ok 3 - interpolate_template_is { ok 1 - Alien::libfoo1 responds to: cflags libs dynamic_libs bin_dir ok 2 - template matches ok 3 - template matches ok 4 - pass with default name ok 5 - pass with custom name ok 6 - fail with string match ok 7 - fail with string match ok 8 - bogus helper 1..8 } ok 4 - ffi_ok { ok 1 - empty ffi ok 2 - min version test ok 3 - min version test subtest { ok 1 1..1 } ok 4 - ignore not found ok 5 - ignore not found subtest { ok 1 ok 2 ok 3 1..3 } ok 6 - lang ok 7 - lang subtest { ok 1 ok 2 1..2 } ok 8 - find symbols { ok 1 - good symbols { ok 1 - test passes ok 2 - tested symbols 1..2 } ok 2 - bad symbols { ok 1 - not found error 1..1 } 1..2 } ok 9 - acme { ok 1 - Acme::Alien::DontPanic responds to: cflags libs dynamic_libs bin_dir ok 2 - ffi ok 3 - ffi subtest { ok 1 - answer is 42 1..1 } 1..3 } 1..9 } ok 5 - xs_ok { ok 1 - xs with no module ok 2 - xs fail with subtest ok 3 - xs with C compile error ok 4 - good { # detect module name Test::Alien::XS::Mod0 # parse xs /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/Gd1MDFTyIJ/test.xs => /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/Gd1MDFTyIJ/test.c # # compile /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/Gd1MDFTyIJ/test.c # gcc -I/Users/fly2400/ap2400-300558/lib/CORE -c -fno-common -DPERL_DARWIN -no-cpp-precomp -mmacosx-version-min=10.9 -arch x86_64 -DUSE_SITECUSTOMIZE -DPERL_RELOCATABLE_INCPUSH -fno-strict-aliasing -pipe -fstack-protector -DPERL_USE_SAFE_PUTENV -O3 -o /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/Gd1MDFTyIJ/test.o /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/Gd1MDFTyIJ/test.c # link /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/Gd1MDFTyIJ/test.o # env LD_RUN_PATH=/Users/fly2400/ap2400-300558/lib/CORE gcc -mmacosx-version-min=10.9 -bundle -undefined dynamic_lookup -Wl,-search_paths_first -arch x86_64 -fstack-protector -o /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/Gd1MDFTyIJ/test.bundle /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/Gd1MDFTyIJ/test.o # created lib /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/Gd1MDFTyIJ/test.bundle ok 1 - xs ok 2 - xs subtest { ok 1 - call Test::Alien::XS::Mod0->baz() 1..1 } ok 3 - xs without parameterized name ok 4 - xs without parameterized name subtest { ok 1 ok 2 - call Foo::Bar->baz() 1..2 } 1..4 } ok 5 - with xs_load { ok 1 - Test::Alien::Synthetic[instance] responds to: cflags libs dynamic_libs bin_dir ok 2 - Test::Alien::Synthetic[instance] responds to: cflags libs dynamic_libs bin_dir # detect module name Test::Alien::XS::Mod1 # parse xs /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/HqBIZe3tCn/test.xs => /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/HqBIZe3tCn/test.c # # compile /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/HqBIZe3tCn/test.c # gcc -I/Users/fly2400/ap2400-300558/lib/CORE -DFOO_ONE=42 -DFOO_TWO=47 -c -fno-common -DPERL_DARWIN -no-cpp-precomp -mmacosx-version-min=10.9 -arch x86_64 -DUSE_SITECUSTOMIZE -DPERL_RELOCATABLE_INCPUSH -fno-strict-aliasing -pipe -fstack-protector -DPERL_USE_SAFE_PUTENV -O3 -o /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/HqBIZe3tCn/test.o /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/HqBIZe3tCn/test.c # link /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/HqBIZe3tCn/test.o # env LD_RUN_PATH=/Users/fly2400/ap2400-300558/lib/CORE gcc -mmacosx-version-min=10.9 -bundle -undefined dynamic_lookup -Wl,-search_paths_first -arch x86_64 -fstack-protector -o /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/HqBIZe3tCn/test.bundle /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/HqBIZe3tCn/test.o # created lib /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/HqBIZe3tCn/test.bundle ok 3 - xs ok 4 - xs subtest { ok 1 - get_foo_one ok 2 - get_foo_two 1..2 } ok 5 - called xs_load with correct args 1..5 } ok 6 - acme { ok 1 - Acme::Alien::DontPanic responds to: cflags libs dynamic_libs bin_dir ok 2 - xs ok 3 - xs subtest { ok 1 - answer is 42 1..1 } 1..3 } 1..6 } ok 6 - xs_ok without no compiler { ok 1 - xs # skip test requires a compiler ok 2 - xs # skip test requires a compiler ok 3 - xs subtest # skip test requires a compiler ok 4 - skip works ok 5 - skip works with cb 1..5 } ok 7 - overrides no overrides { ok 1 - Test::Alien::Synthetic[instance] responds to: cflags libs dynamic_libs bin_dir # detect module name Test::Alien::XS::Mod2 # parse xs /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/qanGO6Ph88/test.xs => /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/qanGO6Ph88/test.c # # compile /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/qanGO6Ph88/test.c # gcc -I/Users/fly2400/ap2400-300558/lib/CORE -DD2=20 -DD1=22 -c -fno-common -DPERL_DARWIN -no-cpp-precomp -mmacosx-version-min=10.9 -arch x86_64 -DUSE_SITECUSTOMIZE -DPERL_RELOCATABLE_INCPUSH -fno-strict-aliasing -pipe -fstack-protector -DPERL_USE_SAFE_PUTENV -O3 -o /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/qanGO6Ph88/test.o /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/qanGO6Ph88/test.c # link /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/qanGO6Ph88/test.o # env LD_RUN_PATH=/Users/fly2400/ap2400-300558/lib/CORE gcc -mmacosx-version-min=10.9 -bundle -undefined dynamic_lookup -Wl,-search_paths_first -arch x86_64 -fstack-protector -o /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/qanGO6Ph88/test.bundle /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/qanGO6Ph88/test.o # created lib /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/qanGO6Ph88/test.bundle ok 2 - extra compiler flags as string ok 3 - extra compiler flags as string subtest { ok 1 1..1 } # detect module name Test::Alien::XS::Mod3 # parse xs /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/pATEnjS_je/test.xs => /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/pATEnjS_je/test.c # # compile /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/pATEnjS_je/test.c # gcc -I/Users/fly2400/ap2400-300558/lib/CORE -DD2=20 -DD1=22 -c -fno-common -DPERL_DARWIN -no-cpp-precomp -mmacosx-version-min=10.9 -arch x86_64 -DUSE_SITECUSTOMIZE -DPERL_RELOCATABLE_INCPUSH -fno-strict-aliasing -pipe -fstack-protector -DPERL_USE_SAFE_PUTENV -O3 -o /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/pATEnjS_je/test.o /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/pATEnjS_je/test.c # link /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/pATEnjS_je/test.o # env LD_RUN_PATH=/Users/fly2400/ap2400-300558/lib/CORE gcc -mmacosx-version-min=10.9 -bundle -undefined dynamic_lookup -Wl,-search_paths_first -arch x86_64 -fstack-protector -o /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/pATEnjS_je/test.bundle /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/pATEnjS_je/test.o # created lib /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/pATEnjS_je/test.bundle ok 4 - extra compiler flags as array ref ok 5 - extra compiler flags as array ref subtest { ok 1 1..1 } 1..5 } 1..7 ok t/test_alien_build.t ................................. ok 1 - alienfile_ok { ok 1 - inline { ok 1 - Alien::Build::Auto::Saqmsvl0=HASH->isa('Alien::Build') ok 2 - has prefix dir # prefix = /tmp/s_aqms3vGl/stage ok 3 - has root dir # root = /tmp/s_aqms3vGl/root ok 4 - has stage dir # stage = /tmp/s_aqms3vGl/stage 1..4 } ok 2 - from file { ok 1 - Alien::Build::Auto::Basic1=HASH->isa('Alien::Build') ok 2 - has prefix dir # prefix = /tmp/pWll12UJOM/stage ok 3 - has root dir # root = /tmp/pWll12UJOM/root ok 4 - has stage dir # stage = /tmp/pWll12UJOM/stage 1..4 } ok 3 - alienfile compiles ok 4 - Alien::Build::Auto::Rdnw2=HASH->isa('Alien::Build') ok 5 - alienfile compiles ok 6 - compile error in alienfile fails test # Alien::Build::Auto::Qq5::Alienfile> hey there ok 7 - alienfile compiles 1..7 } ok 2 - alien_build_ok { ok 1 - no alienfile { ok 1 ok 2 1..2 } ok 2 - alienfile compiles but does not run { ok 1 - alienfile compiles ok 2 ok 3 1..3 } ok 3 - good system { ok 1 - alienfile compiles ok 2 - alien builds okay # Alien::Build::Plugin::Core::Legacy> adding legacy hash to config # Alien::Build::Plugin::Core::Gather> mkdir -p /tmp/TkynlXi4v2/stage/_alien ok 3 - Test::Alien::Build::Faux0001->isa('Alien::Base') ok 4 ok 5 1..5 } ok 4 - good share { ok 1 - alienfile compiles ok 2 - alien builds okay # Alien::Build> single file, assuming archive # Alien::Build::Plugin::Core::Legacy> adding legacy hash to config # Alien::Build::Plugin::Core::Gather> mkdir -p /tmp/Sd1jkPyiR7/stage/_alien ok 3 - Test::Alien::Build::Faux0002->isa('Alien::Base') ok 4 ok 5 ok 6 1..6 } 1..4 } ok 3 - alien_install_type_is { ok 1 - no alienfile { ok 1 - test for anything ok 2 - return false 1..2 } ok 2 - is system { ok 1 - alienfile compiles ok 2 - check for system ok 3 - return true ok 4 - check for share ok 5 - return false 1..5 } ok 3 - is share { ok 1 - alienfile compiles ok 2 - check for share ok 3 - return true ok 4 - check for system ok 5 - return false 1..5 } 1..3 } ok 4 - alien_download_ok { ok 1 - good download { ok 1 - alienfile compiles ok 2 - alien download ok 3 - file content matches 1..3 } ok 2 - good download { ok 1 - alienfile compiles ok 2 - test fails ok 3 - return value is undef 1..3 } 1..2 } ok 5 - alien_extract_ok { ok 1 - good extract { ok 1 - alienfile compiles ok 2 - alien extraction ok 3 - dir is dir ok 4 - has file2 ok 5 - has file3 1..5 } ok 2 - bad extract { ok 1 - alienfile compiles ok 2 - test fails ok 3 - dir is undef 1..3 } 1..2 } ok 6 - alien_rc { ok 1 - create rc { # use strict; use warnings; # # line 423 "/Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/t/test_alien_build.t # # # preload 'Foo::Bar'; # # package Alien::Build::Plugin::Foo::Bar; # # use Alien::Build::Plugin; # # sub init # { # my($self, $meta) = @_; # $meta->prop->{x} = 'y'; # } # # ok 1 - alienfile compiles ok 2 1..2 } 1..1 } ok 7 - test for custom subtest { ok 1 - basic pass { ok 1 ok 2 1..2 } ok 2 - basic fail { ok 1 ok 2 1..2 } 1..2 } ok 8 - alien_checkpoint_ok { ok 1 - without build { ok 1 1..1 } ok 2 - with failure in checkpont { ok 1 - alienfile compiles ok 2 1..2 } ok 3 - with goodness and light { ok 1 - alienfile compiles ok 2 1..2 } 1..3 } ok 9 - alien_resume_ok { ok 1 - with no build { ok 1 1..1 } ok 2 - without checkpoint { ok 1 - alienfile compiles ok 2 1..2 } ok 3 - die in resume { ok 1 - alienfile compiles ok 2 - alien checkpoint ok ok 3 1..3 } ok 4 - goodness and light { ok 1 - alienfile compiles ok 2 - alien checkpoint ok ok 3 ok 4 - Alien::Build::Auto::Nxpc23=HASH->isa('Alien::Build') 1..4 } 1..4 } ok 10 - targ { ok 1 - alienfile compiles 1..1 } 1..10 ok t/test_alien_cancompile.t ............................ ok 1 1..1 ok t/test_alien_canplatypus.t ........................... ok 1 1..1 ok t/test_alien_run.t ................................... ok 1 - run with exit 0 { ok 1 - run_ok # [cmd] # /Users/fly2400/ap2400-300558/bin/perl-dynamic /tmp/R7joYdWLOR/test.pl # [out] # this is some output # [err] # this is some error ok 2 - output ok 3 - error ok 4 - exit ok 5 - signal ok 6 - run.success ok 7 - run.exit_is(0) ok 8 - run.exit_is(22) ok 9 - run.exit_isnt(0) ok 10 - run.exit_isnt(22) ok 11 - run.out_like(is some out) ok 12 - run.out_like(bogus) ok 13 - run.out_unlike(is some out) ok 14 - run.out_unlike(bogus) ok 15 - run.err_like(is some err) ok 16 - run.err_unlike(bogus) 1..16 } ok 2 - run with exit 22 { ok 1 - run_ok ok 2 - output ok 3 - error ok 4 - exit ok 5 - signal ok 6 - run.success ok 7 - run.exit_is(0) ok 8 - run.exit_is(22) ok 9 - run.exit_isnt(0) ok 10 - run.exit_isnt(22) 1..10 } ok 3 - run with kill 9 { ok 1 - run_ok ok 2 - output ok 3 - error ok 4 - exit ok 5 - signal ok 6 - run.success 1..6 } ok 4 - run with not found { ok 1 - run_ok ok 2 - output ok 3 - error ok 4 - exit ok 5 - signal ok 6 - run.success 1..6 } ok 5 - run -1 { ok 1 - run_ok ok 2 - output ok 3 - error ok 4 - exit ok 5 - signal ok 6 - run.success 1..6 } 1..5 ok t/test_alien_synthetic.t ............................. ok 1 - empty synthetic alien ok 2 - cflags ok 3 - libs ok 4 - dynamic_libs ok 5 - bin_dir (exists) ok 6 - bin_dir (does not exist) ok 7 - static flags 1..7 ok All tests successful. Files=67, Tests=345, 17 wallclock secs ( 0.27 usr 0.10 sys + 13.22 cusr 2.85 csys = 16.44 CPU) Result: PASS PLICEASE/Alien-Build-1.37.tar.gz make test TEST_VERBOSE=1 -- OK PPD for Alien-Build-1.37 already made KIWIROY/tmp/Alien-KentSrc-0.3.tar.gz Has already been unwrapped into directory /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-KentSrc-0.3-9IMRmc Prepending /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/arch /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib to PERL5LIB for 'prepare' Configuring K/KI/KIWIROY/tmp/Alien-KentSrc-0.3.tar.gz with Makefile.PL >>> /Users/fly2400/ap2400-300558/bin/perl-dynamic Makefile.PL Alien::Build::CommandSequence> + env | grep -q ^KENT_SRC= Alien::Build::CommandSequence> + env | grep -q ^MACHTYPE= Alien::Build> error in probe (will do a share install): external command failed at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Alien/Build/CommandSequence.pm line 87. Alien::Build> Don't panic, we will attempt a share build from source if possible. Alien::Build> Do not file a bug unless you expected a system install to succeed. Checking if your kit is complete... Looks good Have /Users/fly2400/cpanfly-5.24/var/megalib Want /Users/fly2400/ap2400-300558/lib Your perl and your Config.pm seem to have different ideas about the architecture they are running on. Perl thinks: [megalib] Config says: [darwin-thread-multi-2level] This may or may not cause problems. Please check your installation of perl if you have problems building this extension. Generating a Unix-style Makefile Writing Makefile for Alien::KentSrc Writing MYMETA.yml and MYMETA.json KIWIROY/tmp/Alien-KentSrc-0.3.tar.gz /Users/fly2400/ap2400-300558/bin/perl-dynamic Makefile.PL -- OK Running make for K/KI/KIWIROY/tmp/Alien-KentSrc-0.3.tar.gz Prepending /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/arch /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib to PERL5LIB for 'make' >>> make cp lib/Alien/KentSrc.pm blib/lib/Alien/KentSrc.pm "/Users/fly2400/ap2400-300558/bin/perl-dynamic" -MAlien::Build::MM=cmd -e prefix site /Users/fly2400/ap2400-300558/lib /Users/fly2400/ap2400-300558/site/lib main> prefix /Users/fly2400/ap2400-300558/site/lib/auto/share/dist/Alien-KentSrc "/Users/fly2400/ap2400-300558/bin/perl-dynamic" -MAlien::Build::MM=cmd -e version 0.3 "/Users/fly2400/ap2400-300558/bin/perl-dynamic" -MAlien::Build::MM=cmd -e download Alien::Build::Plugin::Core::Download> decoding html Alien::Build::Plugin::Core::Download> candidate *http://hgdownload.cse.ucsc.edu/admin/jksrc.v361.zip Alien::Build::Plugin::Core::Download> candidate http://hgdownload.cse.ucsc.edu/admin/jksrc.v360.zip Alien::Build::Plugin::Core::Download> candidate http://hgdownload.cse.ucsc.edu/admin/jksrc.v359.zip Alien::Build::Plugin::Core::Download> candidate http://hgdownload.cse.ucsc.edu/admin/jksrc.v358.zip Alien::Build::Plugin::Core::Download> candidate http://hgdownload.cse.ucsc.edu/admin/jksrc.v357.zip Alien::Build::Plugin::Core::Download> candidate http://hgdownload.cse.ucsc.edu/admin/jksrc.v356.zip Alien::Build::Plugin::Core::Download> candidate http://hgdownload.cse.ucsc.edu/admin/jksrc.v355.zip Alien::Build::Plugin::Core::Download> candidate http://hgdownload.cse.ucsc.edu/admin/jksrc.v353.zip Alien::Build::Plugin::Core::Download> candidate ... Alien::Build::Plugin::Core::Download> setting version based on archive to 361 Alien::Build::Plugin::Core::Download> downloaded jksrc.v361.zip "/Users/fly2400/ap2400-300558/bin/perl-dynamic" -MAlien::Build::MM=cmd -e build Alien::Build::CommandSequence> + make -C src/lib CC=gcc CFLAGS="-fPIC -g -Wall -O2" gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o aliType.o -c aliType.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o annoAssembly.o -c annoAssembly.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o annoFilter.o -c annoFilter.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o annoFormatter.o -c annoFormatter.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o annoFormatTab.o -c annoFormatTab.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o annoGrator.o -c annoGrator.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o annoGrateWig.o -c annoGrateWig.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o annoGratorQuery.o -c annoGratorQuery.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o annoOption.o -c annoOption.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o annoRow.o -c annoRow.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o annoStreamer.o -c annoStreamer.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o annoStreamBigBed.o -c annoStreamBigBed.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o annoStreamBigWig.o -c annoStreamBigWig.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o annoStreamTab.o -c annoStreamTab.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o annoStreamLongTabix.o -c annoStreamLongTabix.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o annoStreamVcf.o -c annoStreamVcf.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o apacheLog.o -c apacheLog.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o asParse.o -c asParse.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o aveStats.o -c aveStats.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o axt.o -c axt.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o axtAffine.o -c axtAffine.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o bamFile.o -c bamFile.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o base64.o -c base64.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o basicBed.o -c basicBed.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o bbiRead.o -c bbiRead.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o bbiWrite.o -c bbiWrite.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o bedTabix.o -c bedTabix.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o bigBed.o -c bigBed.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o binRange.o -c binRange.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o bits.o -c bits.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o blastOut.o -c blastOut.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o blastParse.o -c blastParse.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o boxClump.o -c boxClump.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o boxLump.o -c boxLump.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o bPlusTree.o -c bPlusTree.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o bwgCreate.o -c bwgCreate.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o bwgQuery.o -c bwgQuery.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o bwgValsOnChrom.o -c bwgValsOnChrom.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o cda.o -c cda.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o chain.o -c chain.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o chainBlock.o -c chainBlock.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o chainConnect.o -c chainConnect.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o chainToAxt.o -c chainToAxt.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o chainToPsl.o -c chainToPsl.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o cheapcgi.o -c cheapcgi.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o cirTree.o -c cirTree.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o codebias.o -c codebias.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o colHash.o -c colHash.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o common.o -c common.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o correlate.o -c correlate.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o crTree.o -c crTree.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o csv.o -c csv.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o dgRange.o -c dgRange.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o diGraph.o -c diGraph.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o dlist.o -c dlist.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o dnaLoad.o -c dnaLoad.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o dnaMarkov.o -c dnaMarkov.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o dnaMotif.o -c dnaMotif.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o dnaseq.o -c dnaseq.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o dnautil.o -c dnautil.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o dtdParse.o -c dtdParse.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o dyOut.o -c dyOut.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o dystring.o -c dystring.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o elmTree.o -c elmTree.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o emblParse.o -c emblParse.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o errCatch.o -c errCatch.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o errAbort.o -c errAbort.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o fa.o -c fa.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o ffAli.o -c ffAli.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o ffScore.o -c ffScore.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o fieldedTable.o -c fieldedTable.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o filePath.o -c filePath.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o fixColor.o -c fixColor.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o flydna.o -c flydna.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o fof.o -c fof.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o font/mgCourier10.o -c font/mgCourier10.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o font/mgCourier12.o -c font/mgCourier12.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o font/mgCourier14.o -c font/mgCourier14.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o font/mgCourier18.o -c font/mgCourier18.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o font/mgCourier24.o -c font/mgCourier24.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o font/mgCourier34.o -c font/mgCourier34.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o font/mgCourier8.o -c font/mgCourier8.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o font/mgHelvetica10.o -c font/mgHelvetica10.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o font/mgHelvetica12.o -c font/mgHelvetica12.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o font/mgHelvetica14.o -c font/mgHelvetica14.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o font/mgHelvetica18.o -c font/mgHelvetica18.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o font/mgHelvetica24.o -c font/mgHelvetica24.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o font/mgHelvetica34.o -c font/mgHelvetica34.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o font/mgHelvetica8.o -c font/mgHelvetica8.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o font/mgHelveticaBold10.o -c font/mgHelveticaBold10.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o font/mgHelveticaBold12.o -c font/mgHelveticaBold12.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o font/mgHelveticaBold14.o -c font/mgHelveticaBold14.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o font/mgHelveticaBold18.o -c font/mgHelveticaBold18.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o font/mgHelveticaBold24.o -c font/mgHelveticaBold24.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o font/mgHelveticaBold34.o -c font/mgHelveticaBold34.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o font/mgHelveticaBold8.o -c font/mgHelveticaBold8.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o font/mgSixhi6.o -c font/mgSixhi6.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o font/mgSail8.o -c font/mgSail8.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o font/mgTimes10.o -c font/mgTimes10.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o font/mgTimes12.o -c font/mgTimes12.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o font/mgTimes14.o -c font/mgTimes14.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o font/mgTimes18.o -c font/mgTimes18.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o font/mgTimes24.o -c font/mgTimes24.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o font/mgTimes34.o -c font/mgTimes34.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o font/mgTimes8.o -c font/mgTimes8.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o font/mgMenlo12.o -c font/mgMenlo12.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o fq.o -c fq.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o fuzzyShow.o -c fuzzyShow.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o gapCalc.o -c gapCalc.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o gdf.o -c gdf.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o gemfont.o -c gemfont.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o genomeRangeTree.o -c genomeRangeTree.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o gfNet.o -c gfNet.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o gff.o -c gff.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o gff3.o -c gff3.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o gfxPoly.o -c gfxPoly.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o gifLabel.o -c gifLabel.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o hacTree.o -c hacTree.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o hash.o -c hash.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o hex.o -c hex.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o histogram.o -c histogram.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o hmmPfamParse.o -c hmmPfamParse.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o hmmstats.o -c hmmstats.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o htmlColor.o -c htmlColor.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o htmlPage.o -c htmlPage.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o htmshell.o -c htmshell.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o hmac.o -c hmac.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o https.o -c https.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o intExp.o -c intExp.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o intValTree.o -c intValTree.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o internet.o -c internet.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o itsa.o -c itsa.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o iupac.o -c iupac.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o jointalign.o -c jointalign.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o jpegSize.o -c jpegSize.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o jsonParse.o -c jsonParse.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o jsonWrite.o -c jsonWrite.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o keys.o -c keys.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o knetUdc.o -c knetUdc.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o kxTok.o -c kxTok.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o linefile.o -c linefile.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o lineFileOnBigBed.o -c lineFileOnBigBed.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o localmem.o -c localmem.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o log.o -c log.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o longTabix.o -c longTabix.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o longToList.o -c longToList.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o maf.o -c maf.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o mafFromAxt.o -c mafFromAxt.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o mafScore.o -c mafScore.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o mailViaPipe.o -c mailViaPipe.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o md5.o -c md5.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o memalloc.o -c memalloc.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o memgfx.o -c memgfx.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o meta.o -c meta.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o metaWig.o -c metaWig.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o mgCircle.o -c mgCircle.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o mgPolygon.o -c mgPolygon.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o mime.o -c mime.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o net.o -c net.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o nib.o -c nib.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o nibTwo.o -c nibTwo.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o nt4.o -c nt4.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o numObscure.o -c numObscure.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o obscure.o -c obscure.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o oldGff.o -c oldGff.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o oligoTm.o -c oligoTm.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o options.o -c options.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o osunix.o -c osunix.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o pairHmm.o -c pairHmm.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o pairDistance.o -c pairDistance.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o paraFetch.o -c paraFetch.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o peakCluster.o -c peakCluster.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o phyloTree.o -c phyloTree.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o pipeline.o -c pipeline.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o portimpl.o -c portimpl.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o pngwrite.o -c pngwrite.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o psGfx.o -c psGfx.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o psPoly.o -c psPoly.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o pscmGfx.o -c pscmGfx.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o psl.o -c psl.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o pslGenoShow.o -c pslGenoShow.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o pslShow.o -c pslShow.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o pslTbl.o -c pslTbl.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o pslTransMap.o -c pslTransMap.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o pthreadDoList.o -c pthreadDoList.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o pthreadWrap.o -c pthreadWrap.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o qa.o -c qa.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o quickHeap.o -c quickHeap.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o quotedP.o -c quotedP.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o ra.o -c ra.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o rainbow.o -c rainbow.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o raToStruct.o -c raToStruct.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o rbTree.o -c rbTree.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o rangeTree.o -c rangeTree.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o regexHelper.o -c regexHelper.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o repMask.o -c repMask.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o rle.o -c rle.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o rnautil.o -c rnautil.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o rqlEval.o -c rqlEval.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o rqlParse.o -c rqlParse.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o rudp.o -c rudp.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o scoreWindow.o -c scoreWindow.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o seg.o -c seg.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o seqOut.o -c seqOut.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o seqStats.o -c seqStats.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o servBrcMcw.o -c servBrcMcw.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o servCrunx.o -c servCrunx.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o servcis.o -c servcis.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o servcl.o -c servcl.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o servmsII.o -c servmsII.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o servpws.o -c servpws.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o shaRes.o -c shaRes.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o slog.o -c slog.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o snof.o -c snof.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o snofmake.o -c snofmake.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o snofsig.o -c snofsig.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o spaceSaver.o -c spaceSaver.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o spacedColumn.o -c spacedColumn.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o spacedSeed.o -c spacedSeed.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o splatAli.o -c splatAli.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o sqlList.o -c sqlList.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o sqlNum.o -c sqlNum.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o sqlReserved.o -c sqlReserved.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o subText.o -c subText.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o sufa.o -c sufa.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o sufx.o -c sufx.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o synQueue.o -c synQueue.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o tabRow.o -c tabRow.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o tagSchema.o -c tagSchema.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o tagStorm.o -c tagStorm.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o tagToJson.o -c tagToJson.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o tagToSql.o -c tagToSql.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o textOut.o -c textOut.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o tokenizer.o -c tokenizer.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o trix.o -c trix.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o twoBit.o -c twoBit.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o udc.o -c udc.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o uuid.o -c uuid.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o vcf.o -c vcf.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o vcfBits.o -c vcfBits.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o vGfx.o -c vGfx.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o vPng.o -c vPng.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o verbose.o -c verbose.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o wildcmp.o -c wildcmp.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o windowsToAscii.o -c windowsToAscii.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o wormdna.o -c wormdna.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o xAli.o -c xAli.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o xa.o -c xa.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o xap.o -c xap.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o xenshow.o -c xenshow.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o xmlEscape.o -c xmlEscape.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o xp.o -c xp.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o zlibFace.o -c zlibFace.c ar rcus x86_64/jkweb.a aliType.o annoAssembly.o annoFilter.o annoFormatter.o annoFormatTab.o annoGrator.o annoGrateWig.o annoGratorQuery.o annoOption.o annoRow.o annoStreamer.o annoStreamBigBed.o annoStreamBigWig.o annoStreamTab.o annoStreamLongTabix.o annoStreamVcf.o apacheLog.o asParse.o aveStats.o axt.o axtAffine.o bamFile.o base64.o basicBed.o bbiRead.o bbiWrite.o bedTabix.o bigBed.o binRange.o bits.o blastOut.o blastParse.o boxClump.o boxLump.o bPlusTree.o bwgCreate.o bwgQuery.o bwgValsOnChrom.o cda.o chain.o chainBlock.o chainConnect.o chainToAxt.o chainToPsl.o cheapcgi.o cirTree.o codebias.o colHash.o common.o correlate.o crTree.o csv.o dgRange.o diGraph.o dlist.o dnaLoad.o dnaMarkov.o dnaMotif.o dnaseq.o dnautil.o dtdParse.o dyOut.o dystring.o elmTree.o emblParse.o errCatch.o errAbort.o fa.o ffAli.o ffScore.o fieldedTable.o filePath.o fixColor.o flydna.o fof.o font/mgCourier10.o font/mgCourier12.o font/mgCourier14.o font/mgCourier18.o font/mgCourier24.o font/mgCourier34.o font/mgCourier8.o font/mgHelvetica10.o font/mgHelvetica12.o font/mgHelvetica14.o font/mgHelvetica18.o font/mgHelvetica24.o font/mgHelvetica34.o font/mgHelvetica8.o font/mgHelveticaBold10.o font/mgHelveticaBold12.o font/mgHelveticaBold14.o font/mgHelveticaBold18.o font/mgHelveticaBold24.o font/mgHelveticaBold34.o font/mgHelveticaBold8.o font/mgSixhi6.o font/mgSail8.o font/mgTimes10.o font/mgTimes12.o font/mgTimes14.o font/mgTimes18.o font/mgTimes24.o font/mgTimes34.o font/mgTimes8.o font/mgMenlo12.o fq.o fuzzyShow.o gapCalc.o gdf.o gemfont.o genomeRangeTree.o gfNet.o gff.o gff3.o gfxPoly.o gifLabel.o hacTree.o hash.o hex.o histogram.o hmmPfamParse.o hmmstats.o htmlColor.o htmlPage.o htmshell.o hmac.o https.o intExp.o intValTree.o internet.o itsa.o iupac.o jointalign.o jpegSize.o jsonParse.o jsonWrite.o keys.o knetUdc.o kxTok.o linefile.o lineFileOnBigBed.o localmem.o log.o longTabix.o longToList.o maf.o mafFromAxt.o mafScore.o mailViaPipe.o md5.o memalloc.o memgfx.o meta.o metaWig.o mgCircle.o mgPolygon.o mime.o net.o nib.o nibTwo.o nt4.o numObscure.o obscure.o oldGff.o oligoTm.o options.o osunix.o pairHmm.o pairDistance.o paraFetch.o peakCluster.o phyloTree.o pipeline.o portimpl.o pngwrite.o psGfx.o psPoly.o pscmGfx.o psl.o pslGenoShow.o pslShow.o pslTbl.o pslTransMap.o pthreadDoList.o pthreadWrap.o qa.o quickHeap.o quotedP.o ra.o rainbow.o raToStruct.o rbTree.o rangeTree.o regexHelper.o repMask.o rle.o rnautil.o rqlEval.o rqlParse.o rudp.o scoreWindow.o seg.o seqOut.o seqStats.o servBrcMcw.o servCrunx.o servcis.o servcl.o servmsII.o servpws.o shaRes.o slog.o snof.o snofmake.o snofsig.o spaceSaver.o spacedColumn.o spacedSeed.o splatAli.o sqlList.o sqlNum.o sqlReserved.o subText.o sufa.o sufx.o synQueue.o tabRow.o tagSchema.o tagStorm.o tagToJson.o tagToSql.o textOut.o tokenizer.o trix.o twoBit.o udc.o uuid.o vcf.o vcfBits.o vGfx.o vPng.o verbose.o wildcmp.o windowsToAscii.o wormdna.o xAli.o xa.o xap.o xenshow.o xmlEscape.o xp.o zlibFace.o Alien::Build::CommandSequence> + make -C src/htslib CC=gcc CFLAGS="-fPIC -g -Wall -O2" gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o kfunc.o -c kfunc.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o knetfile.o -c knetfile.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o kstring.o -c kstring.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o bgzf.o -c bgzf.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o faidx.o -c faidx.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o hfile.o -c hfile.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o hfile_net.o -c hfile_net.c echo '#define HTS_VERSION "1.3"' > version.h gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o hts.o -c hts.c hts.c:48:5: warning: unused function 'ks_getc' [-Wunused-function] KSTREAM_INIT2(, BGZF*, bgzf_read, 65536) ^ ../htslib/htslib/kseq.h:152:2: note: expanded from macro 'KSTREAM_INIT2' __KS_INLINED(__read) ^ ../htslib/htslib/kseq.h:68:20: note: expanded from macro '__KS_INLINED' static inline int ks_getc(kstream_t *ks) \ ^ 1 warning generated. gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o md5.o -c md5.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o regidx.o -c regidx.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o sam.o -c sam.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o synced_bcf_reader.o -c synced_bcf_reader.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o vcf_sweep.o -c vcf_sweep.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o tbx.o -c tbx.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o vcf.o -c vcf.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o vcfutils.o -c vcfutils.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o cram/cram_codecs.o -c cram/cram_codecs.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o cram/cram_decode.o -c cram/cram_decode.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o cram/cram_encode.o -c cram/cram_encode.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o cram/cram_external.o -c cram/cram_external.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o cram/cram_index.o -c cram/cram_index.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o cram/cram_io.o -c cram/cram_io.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o cram/cram_samtools.o -c cram/cram_samtools.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o cram/cram_stats.o -c cram/cram_stats.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o cram/files.o -c cram/files.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o cram/mFILE.o -c cram/mFILE.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o cram/open_trace_file.o -c cram/open_trace_file.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o cram/pooled_alloc.o -c cram/pooled_alloc.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o cram/rANS_static.o -c cram/rANS_static.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o cram/sam_header.o -c cram/sam_header.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o cram/string_alloc.o -c cram/string_alloc.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o cram/thread_pool.o -c cram/thread_pool.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o cram/vlen.o -c cram/vlen.c gcc -O -g -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wno-unused-variable -Wno-deprecated-declarations -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I../htslib -I/include -I/Users/fly2400/cpanfly-5.24/var/libs/include/libpng16 -o cram/zfio.o -c cram/zfio.c ar -rc libhts.a kfunc.o knetfile.o kstring.o bgzf.o faidx.o hfile.o hfile_net.o hts.o md5.o regidx.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_samtools.o cram/cram_stats.o cram/files.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/rANS_static.o cram/sam_header.o cram/string_alloc.o cram/thread_pool.o cram/vlen.o cram/zfio.o ranlib libhts.a Alien::Build::CommandSequence> + mkdir -p /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-KentSrc-0.3-9IMRmc/blib/lib/auto/share/dist/Alien-KentSrc/lib/x86_64 Alien::Build::CommandSequence> + cp src/lib/x86_64/jkweb.a /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-KentSrc-0.3-9IMRmc/blib/lib/auto/share/dist/Alien-KentSrc/lib/x86_64/libjkweb.a Alien::Build::CommandSequence> + cp src/lib/x86_64/jkweb.a /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-KentSrc-0.3-9IMRmc/blib/lib/auto/share/dist/Alien-KentSrc/lib/x86_64/jkweb.a Alien::Build::CommandSequence> + cp src/htslib/libhts.a /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-KentSrc-0.3-9IMRmc/blib/lib/auto/share/dist/Alien-KentSrc/lib/x86_64/ Alien::Build::CommandSequence> + mkdir -p /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-KentSrc-0.3-9IMRmc/blib/lib/auto/share/dist/Alien-KentSrc/inc Alien::Build::CommandSequence> + cp src/inc/*.h /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-KentSrc-0.3-9IMRmc/blib/lib/auto/share/dist/Alien-KentSrc/inc Alien::Build::CommandSequence> + mkdir -p /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-KentSrc-0.3-9IMRmc/blib/lib/auto/share/dist/Alien-KentSrc/inc/htslib Alien::Build::CommandSequence> + cp src/htslib/htslib/*.h /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-KentSrc-0.3-9IMRmc/blib/lib/auto/share/dist/Alien-KentSrc/inc/htslib/ Alien::Build::Plugin::Core::Legacy> adding legacy hash to config Alien::Build::Plugin::Core::Gather> mkdir -p /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-KentSrc-0.3-9IMRmc/blib/lib/auto/share/dist/Alien-KentSrc/_alien Manifying 1 pod document KIWIROY/tmp/Alien-KentSrc-0.3.tar.gz make -- OK Prepending /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/arch /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib to PERL5LIB for 'test' Running make test >>> make test TEST_VERBOSE=1 "/Users/fly2400/ap2400-300558/bin/perl-dynamic" -MAlien::Build::MM=cmd -e test PERL_DL_NONLAZY=1 "/Users/fly2400/ap2400-300558/bin/perl-dynamic" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-basic.t .... 1..10 ok 1 - use Alien::KentSrc ok 2 - POD test for blib/lib/Alien/KentSrc.pm ok 3 - Pod coverage on Alien::KentSrc ok 4 - use Alien::KentSrc::Install::Files ok 5 - POD test for blib/lib/Alien/KentSrc/Install/Files.pm (no pod) ok 6 - Pod coverage on Alien::KentSrc::Install::Files ok 7 - Changes is loadable ok 8 - Changes contains at least one release ok 9 - Changes contains valid release dates ok 10 - Changes contains valid version numbers ok Can't exec "testalienwk106/foo.pl": No such file or directory at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-Build-1.37-AsxSue/blib/lib/Test/Alien.pm line 614, line 1. t/01-compile.t .. ok 1 - Alien::KentSrc responds to: cflags libs dynamic_libs bin_dir # detect module name CompileTest # parse xs /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-KentSrc-0.3-9IMRmc/l7mL8OV8l0/test.xs => /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-KentSrc-0.3-9IMRmc/l7mL8OV8l0/test.c # # compile /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-KentSrc-0.3-9IMRmc/l7mL8OV8l0/test.c # gcc -I/Users/fly2400/ap2400-300558/lib/CORE -Wno-format -Wformat=0 -DMACHTYPE_x86_64 -I/Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-KentSrc-0.3-9IMRmc/blib/lib/auto/share/dist/Alien-KentSrc/inc -c -fno-common -DPERL_DARWIN -no-cpp-precomp -mmacosx-version-min=10.9 -arch x86_64 -DUSE_SITECUSTOMIZE -DPERL_RELOCATABLE_INCPUSH -fno-strict-aliasing -pipe -fstack-protector -DPERL_USE_SAFE_PUTENV -O3 -o /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-KentSrc-0.3-9IMRmc/l7mL8OV8l0/test.o /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-KentSrc-0.3-9IMRmc/l7mL8OV8l0/test.c # link /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-KentSrc-0.3-9IMRmc/l7mL8OV8l0/test.o # env LD_RUN_PATH=/Users/fly2400/ap2400-300558/lib/CORE gcc -L/Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-KentSrc-0.3-9IMRmc/blib/lib/auto/share/dist/Alien-KentSrc/lib/x86_64 -mmacosx-version-min=10.9 -bundle -undefined dynamic_lookup -Wl,-search_paths_first -arch x86_64 -fstack-protector -o /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-KentSrc-0.3-9IMRmc/l7mL8OV8l0/test.bundle /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-KentSrc-0.3-9IMRmc/l7mL8OV8l0/test.o -ljkweb -lhts -lz -lssl -lpthread # created lib /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-KentSrc-0.3-9IMRmc/l7mL8OV8l0/test.bundle ok 2 - xs ok 3 - xs subtest { ok 1 - CompileTest::check() returns CompileTest 1..1 } 1..3 ok t/02-files.t .... ok 1 - Alien::KentSrc responds to: cflags libs dynamic_libs bin_dir ok 2 - looks like a path ok 3 - valid machtype ok 4 - jkweb library exists at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-KentSrc-0.3-9IMRmc/blib/lib/auto/share/dist/Alien-KentSrc/lib/x86_64/jkweb.a ok 5 - jkweb library exists at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-KentSrc-0.3-9IMRmc/blib/lib/auto/share/dist/Alien-KentSrc/lib/x86_64/libjkweb.a ok 6 - htslib library exists at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-KentSrc-0.3-9IMRmc/blib/lib/auto/share/dist/Alien-KentSrc/lib/x86_64/libhts.a ok 7 - header file exists at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-KentSrc-0.3-9IMRmc/blib/lib/auto/share/dist/Alien-KentSrc/inc/bigWig.h ok 8 - header file exists at /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-KentSrc-0.3-9IMRmc/blib/lib/auto/share/dist/Alien-KentSrc/inc/htslib/hts.h 1..8 ok All tests successful. Files=3, Tests=21, 1 wallclock secs ( 0.03 usr 0.01 sys + 0.49 cusr 0.48 csys = 1.01 CPU) Result: PASS KIWIROY/tmp/Alien-KentSrc-0.3.tar.gz make test TEST_VERBOSE=1 -- OK Fetching with LWP: http://ppm.activestate.com/CPAN/authors/id/K/KI/KIWIROY/tmp/CHECKSUMS Roy Storey <kiwiroy@cpan.org> Fetch/build/stash Kent src from http://hgdownload.cse.ucsc.edu/admin/ >>> (cd /Users/fly2400/cpanfly-5.24/var/tmp/cpan_build/Alien-KentSrc-0.3-9IMRmc && tar cvf - Alien-KentSrc-0.3.ppd blib) | gzip -c >/Users/fly2400/cpanfly-5.24/var/REPO/K/KI/KIWIROY/tmp/Alien-KentSrc-0.3.tar.gz Alien-KentSrc-0.3.ppd blib/ blib/arch/ blib/arch/auto/ blib/arch/auto/Alien/ blib/arch/auto/Alien/KentSrc/ blib/arch/auto/Alien/KentSrc/KentSrc.txt blib/lib/ blib/lib/Alien/ blib/lib/Alien/KentSrc/ blib/lib/Alien/KentSrc/Install/ blib/lib/Alien/KentSrc/Install/Files.pm blib/lib/Alien/KentSrc.pm blib/lib/auto/ blib/lib/auto/share/ blib/lib/auto/share/dist/ blib/lib/auto/share/dist/Alien-KentSrc/ blib/lib/auto/share/dist/Alien-KentSrc/_alien/ blib/lib/auto/share/dist/Alien-KentSrc/_alien/alien.json blib/lib/auto/share/dist/Alien-KentSrc/_alien/alienfile blib/lib/auto/share/dist/Alien-KentSrc/inc/ blib/lib/auto/share/dist/Alien-KentSrc/inc/ace.h blib/lib/auto/share/dist/Alien-KentSrc/inc/aliType.h blib/lib/auto/share/dist/Alien-KentSrc/inc/annoAssembly.h blib/lib/auto/share/dist/Alien-KentSrc/inc/annoFilter.h blib/lib/auto/share/dist/Alien-KentSrc/inc/annoFormatTab.h blib/lib/auto/share/dist/Alien-KentSrc/inc/annoFormatter.h blib/lib/auto/share/dist/Alien-KentSrc/inc/annoGrateWig.h blib/lib/auto/share/dist/Alien-KentSrc/inc/annoGrator.h blib/lib/auto/share/dist/Alien-KentSrc/inc/annoGratorQuery.h blib/lib/auto/share/dist/Alien-KentSrc/inc/annoOption.h blib/lib/auto/share/dist/Alien-KentSrc/inc/annoRow.h blib/lib/auto/share/dist/Alien-KentSrc/inc/annoStreamBigBed.h blib/lib/auto/share/dist/Alien-KentSrc/inc/annoStreamBigWig.h blib/lib/auto/share/dist/Alien-KentSrc/inc/annoStreamer.h blib/lib/auto/share/dist/Alien-KentSrc/inc/annoStreamLongTabix.h blib/lib/auto/share/dist/Alien-KentSrc/inc/annoStreamTab.h blib/lib/auto/share/dist/Alien-KentSrc/inc/annoStreamVcf.h blib/lib/auto/share/dist/Alien-KentSrc/inc/apacheLog.h blib/lib/auto/share/dist/Alien-KentSrc/inc/asParse.h blib/lib/auto/share/dist/Alien-KentSrc/inc/aveStats.h blib/lib/auto/share/dist/Alien-KentSrc/inc/axt.h blib/lib/auto/share/dist/Alien-KentSrc/inc/bamFile.h blib/lib/auto/share/dist/Alien-KentSrc/inc/bandExt.h blib/lib/auto/share/dist/Alien-KentSrc/inc/base64.h blib/lib/auto/share/dist/Alien-KentSrc/inc/basicBed.h blib/lib/auto/share/dist/Alien-KentSrc/inc/bbiFile.h blib/lib/auto/share/dist/Alien-KentSrc/inc/bedTabix.h blib/lib/auto/share/dist/Alien-KentSrc/inc/bigBed.h blib/lib/auto/share/dist/Alien-KentSrc/inc/bigWig.h blib/lib/auto/share/dist/Alien-KentSrc/inc/binRange.h blib/lib/auto/share/dist/Alien-KentSrc/inc/bits.h blib/lib/auto/share/dist/Alien-KentSrc/inc/blastParse.h blib/lib/auto/share/dist/Alien-KentSrc/inc/boxClump.h blib/lib/auto/share/dist/Alien-KentSrc/inc/boxLump.h blib/lib/auto/share/dist/Alien-KentSrc/inc/bPlusTree.h blib/lib/auto/share/dist/Alien-KentSrc/inc/bwgInternal.h blib/lib/auto/share/dist/Alien-KentSrc/inc/cda.h blib/lib/auto/share/dist/Alien-KentSrc/inc/chain.h blib/lib/auto/share/dist/Alien-KentSrc/inc/chainBlock.h blib/lib/auto/share/dist/Alien-KentSrc/inc/chainConnect.h blib/lib/auto/share/dist/Alien-KentSrc/inc/chainToAxt.h blib/lib/auto/share/dist/Alien-KentSrc/inc/chainToPsl.h blib/lib/auto/share/dist/Alien-KentSrc/inc/cheapcgi.h blib/lib/auto/share/dist/Alien-KentSrc/inc/cirTree.h blib/lib/auto/share/dist/Alien-KentSrc/inc/codebias.h blib/lib/auto/share/dist/Alien-KentSrc/inc/common.h blib/lib/auto/share/dist/Alien-KentSrc/inc/correlate.h blib/lib/auto/share/dist/Alien-KentSrc/inc/crTree.h blib/lib/auto/share/dist/Alien-KentSrc/inc/crudeali.h blib/lib/auto/share/dist/Alien-KentSrc/inc/csv.h blib/lib/auto/share/dist/Alien-KentSrc/inc/diGraph.h blib/lib/auto/share/dist/Alien-KentSrc/inc/dlist.h blib/lib/auto/share/dist/Alien-KentSrc/inc/dnaLoad.h blib/lib/auto/share/dist/Alien-KentSrc/inc/dnaMarkov.h blib/lib/auto/share/dist/Alien-KentSrc/inc/dnaMotif.h blib/lib/auto/share/dist/Alien-KentSrc/inc/dnaseq.h blib/lib/auto/share/dist/Alien-KentSrc/inc/dnautil.h blib/lib/auto/share/dist/Alien-KentSrc/inc/dtdParse.h blib/lib/auto/share/dist/Alien-KentSrc/inc/dyOut.h blib/lib/auto/share/dist/Alien-KentSrc/inc/dystring.h blib/lib/auto/share/dist/Alien-KentSrc/inc/elmTree.h blib/lib/auto/share/dist/Alien-KentSrc/inc/emblParse.h blib/lib/auto/share/dist/Alien-KentSrc/inc/ens.h blib/lib/auto/share/dist/Alien-KentSrc/inc/errAbort.h blib/lib/auto/share/dist/Alien-KentSrc/inc/errCatch.h blib/lib/auto/share/dist/Alien-KentSrc/inc/fa.h blib/lib/auto/share/dist/Alien-KentSrc/inc/fieldedTable.h blib/lib/auto/share/dist/Alien-KentSrc/inc/filePath.h blib/lib/auto/share/dist/Alien-KentSrc/inc/flydna.h blib/lib/auto/share/dist/Alien-KentSrc/inc/fof.h blib/lib/auto/share/dist/Alien-KentSrc/inc/fq.h blib/lib/auto/share/dist/Alien-KentSrc/inc/fuzzyFind.h blib/lib/auto/share/dist/Alien-KentSrc/inc/gapCalc.h blib/lib/auto/share/dist/Alien-KentSrc/inc/gdf.h blib/lib/auto/share/dist/Alien-KentSrc/inc/genoFind.h blib/lib/auto/share/dist/Alien-KentSrc/inc/genomeRangeTree.h blib/lib/auto/share/dist/Alien-KentSrc/inc/gfClientLib.h blib/lib/auto/share/dist/Alien-KentSrc/inc/gff.h blib/lib/auto/share/dist/Alien-KentSrc/inc/gff3.h blib/lib/auto/share/dist/Alien-KentSrc/inc/gfPcrLib.h blib/lib/auto/share/dist/Alien-KentSrc/inc/gfWebLib.h blib/lib/auto/share/dist/Alien-KentSrc/inc/gfxPoly.h blib/lib/auto/share/dist/Alien-KentSrc/inc/gifLabel.h blib/lib/auto/share/dist/Alien-KentSrc/inc/hacTree.h blib/lib/auto/share/dist/Alien-KentSrc/inc/hash.h blib/lib/auto/share/dist/Alien-KentSrc/inc/hex.h blib/lib/auto/share/dist/Alien-KentSrc/inc/hgap.h blib/lib/auto/share/dist/Alien-KentSrc/inc/hgdb.h blib/lib/auto/share/dist/Alien-KentSrc/inc/hgGene.h blib/lib/auto/share/dist/Alien-KentSrc/inc/histogram.h blib/lib/auto/share/dist/Alien-KentSrc/inc/hmac.h blib/lib/auto/share/dist/Alien-KentSrc/inc/hmmPfamParse.h blib/lib/auto/share/dist/Alien-KentSrc/inc/hmmstats.h blib/lib/auto/share/dist/Alien-KentSrc/inc/htmlColor.h blib/lib/auto/share/dist/Alien-KentSrc/inc/htmlPage.h blib/lib/auto/share/dist/Alien-KentSrc/inc/htmshell.h blib/lib/auto/share/dist/Alien-KentSrc/inc/htslib/ blib/lib/auto/share/dist/Alien-KentSrc/inc/htslib/bgzf.h blib/lib/auto/share/dist/Alien-KentSrc/inc/htslib/cram.h blib/lib/auto/share/dist/Alien-KentSrc/inc/htslib/faidx.h blib/lib/auto/share/dist/Alien-KentSrc/inc/htslib/hfile.h blib/lib/auto/share/dist/Alien-KentSrc/inc/htslib/hts.h blib/lib/auto/share/dist/Alien-KentSrc/inc/htslib/hts_defs.h blib/lib/auto/share/dist/Alien-KentSrc/inc/htslib/kbitset.h blib/lib/auto/share/dist/Alien-KentSrc/inc/htslib/kfunc.h blib/lib/auto/share/dist/Alien-KentSrc/inc/htslib/khash.h blib/lib/auto/share/dist/Alien-KentSrc/inc/htslib/khash_str2int.h blib/lib/auto/share/dist/Alien-KentSrc/inc/htslib/klist.h blib/lib/auto/share/dist/Alien-KentSrc/inc/htslib/knetfile.h blib/lib/auto/share/dist/Alien-KentSrc/inc/htslib/kseq.h blib/lib/auto/share/dist/Alien-KentSrc/inc/htslib/ksort.h blib/lib/auto/share/dist/Alien-KentSrc/inc/htslib/kstring.h blib/lib/auto/share/dist/Alien-KentSrc/inc/htslib/regidx.h blib/lib/auto/share/dist/Alien-KentSrc/inc/htslib/sam.h blib/lib/auto/share/dist/Alien-KentSrc/inc/htslib/synced_bcf_reader.h blib/lib/auto/share/dist/Alien-KentSrc/inc/htslib/tbx.h blib/lib/auto/share/dist/Alien-KentSrc/inc/htslib/vcf.h blib/lib/auto/share/dist/Alien-KentSrc/inc/htslib/vcf_sweep.h blib/lib/auto/share/dist/Alien-KentSrc/inc/htslib/vcfutils.h blib/lib/auto/share/dist/Alien-KentSrc/inc/https.h blib/lib/auto/share/dist/Alien-KentSrc/inc/internet.h blib/lib/auto/share/dist/Alien-KentSrc/inc/intValTree.h blib/lib/auto/share/dist/Alien-KentSrc/inc/itsa.h blib/lib/auto/share/dist/Alien-KentSrc/inc/iupac.h blib/lib/auto/share/dist/Alien-KentSrc/inc/jointalign.h blib/lib/auto/share/dist/Alien-KentSrc/inc/jpegSize.h blib/lib/auto/share/dist/Alien-KentSrc/inc/jsonParse.h blib/lib/auto/share/dist/Alien-KentSrc/inc/jsonWrite.h blib/lib/auto/share/dist/Alien-KentSrc/inc/keys.h blib/lib/auto/share/dist/Alien-KentSrc/inc/knetUdc.h blib/lib/auto/share/dist/Alien-KentSrc/inc/kxTok.h blib/lib/auto/share/dist/Alien-KentSrc/inc/linefile.h blib/lib/auto/share/dist/Alien-KentSrc/inc/localmem.h blib/lib/auto/share/dist/Alien-KentSrc/inc/log.h blib/lib/auto/share/dist/Alien-KentSrc/inc/longTabix.h blib/lib/auto/share/dist/Alien-KentSrc/inc/longToList.h blib/lib/auto/share/dist/Alien-KentSrc/inc/maDbRep.h blib/lib/auto/share/dist/Alien-KentSrc/inc/maf.h blib/lib/auto/share/dist/Alien-KentSrc/inc/mailViaPipe.h blib/lib/auto/share/dist/Alien-KentSrc/inc/maToFf.h blib/lib/auto/share/dist/Alien-KentSrc/inc/md5.h blib/lib/auto/share/dist/Alien-KentSrc/inc/memalloc.h blib/lib/auto/share/dist/Alien-KentSrc/inc/memgfx.h blib/lib/auto/share/dist/Alien-KentSrc/inc/meta.h blib/lib/auto/share/dist/Alien-KentSrc/inc/metaWig.h blib/lib/auto/share/dist/Alien-KentSrc/inc/mime.h blib/lib/auto/share/dist/Alien-KentSrc/inc/net.h blib/lib/auto/share/dist/Alien-KentSrc/inc/nib.h blib/lib/auto/share/dist/Alien-KentSrc/inc/nibTwo.h blib/lib/auto/share/dist/Alien-KentSrc/inc/nt4.h blib/lib/auto/share/dist/Alien-KentSrc/inc/obscure.h blib/lib/auto/share/dist/Alien-KentSrc/inc/oldGff.h blib/lib/auto/share/dist/Alien-KentSrc/inc/oligoTm.h blib/lib/auto/share/dist/Alien-KentSrc/inc/ooc.h blib/lib/auto/share/dist/Alien-KentSrc/inc/options.h blib/lib/auto/share/dist/Alien-KentSrc/inc/pairDistance.h blib/lib/auto/share/dist/Alien-KentSrc/inc/pairHmm.h blib/lib/auto/share/dist/Alien-KentSrc/inc/paraFetch.h blib/lib/auto/share/dist/Alien-KentSrc/inc/patSpace.h blib/lib/auto/share/dist/Alien-KentSrc/inc/peakCluster.h blib/lib/auto/share/dist/Alien-KentSrc/inc/phyloTree.h blib/lib/auto/share/dist/Alien-KentSrc/inc/pipeline.h blib/lib/auto/share/dist/Alien-KentSrc/inc/portable.h blib/lib/auto/share/dist/Alien-KentSrc/inc/pscmGfx.h blib/lib/auto/share/dist/Alien-KentSrc/inc/psGfx.h blib/lib/auto/share/dist/Alien-KentSrc/inc/psl.h blib/lib/auto/share/dist/Alien-KentSrc/inc/pslTbl.h blib/lib/auto/share/dist/Alien-KentSrc/inc/pslTransMap.h blib/lib/auto/share/dist/Alien-KentSrc/inc/psPoly.h blib/lib/auto/share/dist/Alien-KentSrc/inc/pthreadDoList.h blib/lib/auto/share/dist/Alien-KentSrc/inc/pthreadWrap.h blib/lib/auto/share/dist/Alien-KentSrc/inc/qa.h blib/lib/auto/share/dist/Alien-KentSrc/inc/quickHeap.h blib/lib/auto/share/dist/Alien-KentSrc/inc/quotedP.h blib/lib/auto/share/dist/Alien-KentSrc/inc/ra.h blib/lib/auto/share/dist/Alien-KentSrc/inc/rainbow.h blib/lib/auto/share/dist/Alien-KentSrc/inc/rangeTree.h blib/lib/auto/share/dist/Alien-KentSrc/inc/raToStruct.h blib/lib/auto/share/dist/Alien-KentSrc/inc/rbTree.h blib/lib/auto/share/dist/Alien-KentSrc/inc/regexHelper.h blib/lib/auto/share/dist/Alien-KentSrc/inc/repMask.h blib/lib/auto/share/dist/Alien-KentSrc/inc/rle.h blib/lib/auto/share/dist/Alien-KentSrc/inc/rnautil.h blib/lib/auto/share/dist/Alien-KentSrc/inc/rql.h blib/lib/auto/share/dist/Alien-KentSrc/inc/rudp.h blib/lib/auto/share/dist/Alien-KentSrc/inc/scoreWindow.h blib/lib/auto/share/dist/Alien-KentSrc/inc/seg.h blib/lib/auto/share/dist/Alien-KentSrc/inc/seqOut.h blib/lib/auto/share/dist/Alien-KentSrc/inc/seqStats.h blib/lib/auto/share/dist/Alien-KentSrc/inc/shaRes.h blib/lib/auto/share/dist/Alien-KentSrc/inc/sig.h blib/lib/auto/share/dist/Alien-KentSrc/inc/slog.h blib/lib/auto/share/dist/Alien-KentSrc/inc/snof.h blib/lib/auto/share/dist/Alien-KentSrc/inc/snofmake.h blib/lib/auto/share/dist/Alien-KentSrc/inc/spacedColumn.h blib/lib/auto/share/dist/Alien-KentSrc/inc/spacedSeed.h blib/lib/auto/share/dist/Alien-KentSrc/inc/spaceSaver.h blib/lib/auto/share/dist/Alien-KentSrc/inc/splatAli.h blib/lib/auto/share/dist/Alien-KentSrc/inc/splix.h blib/lib/auto/share/dist/Alien-KentSrc/inc/sqlList.h blib/lib/auto/share/dist/Alien-KentSrc/inc/sqlNum.h blib/lib/auto/share/dist/Alien-KentSrc/inc/sqlReserved.h blib/lib/auto/share/dist/Alien-KentSrc/inc/srcVersion.h blib/lib/auto/share/dist/Alien-KentSrc/inc/subText.h blib/lib/auto/share/dist/Alien-KentSrc/inc/sufa.h blib/lib/auto/share/dist/Alien-KentSrc/inc/sufx.h blib/lib/auto/share/dist/Alien-KentSrc/inc/supStitch.h blib/lib/auto/share/dist/Alien-KentSrc/inc/synQueue.h blib/lib/auto/share/dist/Alien-KentSrc/inc/tabRow.h blib/lib/auto/share/dist/Alien-KentSrc/inc/tagSchema.h blib/lib/auto/share/dist/Alien-KentSrc/inc/tagStorm.h blib/lib/auto/share/dist/Alien-KentSrc/inc/tagToJson.h blib/lib/auto/share/dist/Alien-KentSrc/inc/tagToSql.h blib/lib/auto/share/dist/Alien-KentSrc/inc/textOut.h blib/lib/auto/share/dist/Alien-KentSrc/inc/tokenizer.h blib/lib/auto/share/dist/Alien-KentSrc/inc/trans3.h blib/lib/auto/share/dist/Alien-KentSrc/inc/trix.h blib/lib/auto/share/dist/Alien-KentSrc/inc/twoBit.h blib/lib/auto/share/dist/Alien-KentSrc/inc/udc.h blib/lib/auto/share/dist/Alien-KentSrc/inc/unfin.h blib/lib/auto/share/dist/Alien-KentSrc/inc/uuid.h blib/lib/auto/share/dist/Alien-KentSrc/inc/vcf.h blib/lib/auto/share/dist/Alien-KentSrc/inc/vcfBits.h blib/lib/auto/share/dist/Alien-KentSrc/inc/verbose.h blib/lib/auto/share/dist/Alien-KentSrc/inc/vGfx.h blib/lib/auto/share/dist/Alien-KentSrc/inc/windowsToAscii.h blib/lib/auto/share/dist/Alien-KentSrc/inc/wormdna.h blib/lib/auto/share/dist/Alien-KentSrc/inc/xa.h blib/lib/auto/share/dist/Alien-KentSrc/inc/xAli.h blib/lib/auto/share/dist/Alien-KentSrc/inc/xap.h blib/lib/auto/share/dist/Alien-KentSrc/inc/xenalign.h blib/lib/auto/share/dist/Alien-KentSrc/inc/xmlEscape.h blib/lib/auto/share/dist/Alien-KentSrc/inc/xp.h blib/lib/auto/share/dist/Alien-KentSrc/inc/zlibFace.h blib/lib/auto/share/dist/Alien-KentSrc/lib/ blib/lib/auto/share/dist/Alien-KentSrc/lib/x86_64/ blib/lib/auto/share/dist/Alien-KentSrc/lib/x86_64/jkweb.a blib/lib/auto/share/dist/Alien-KentSrc/lib/x86_64/libhts.a blib/lib/auto/share/dist/Alien-KentSrc/lib/x86_64/libjkweb.a blib/man3/ blib/man3/Alien::KentSrc.3 Finished 2018-03-08T02:03:44