PATH=/usr/bin:/bin Start 2011-05-22T01:15:17 ActivePerl-818 CPAN-1.9402 Going to read '/Users/fly818/var/cpan/Metadata' Database was generated on Sat, 21 May 2011 22:27:09 GMT Running make for C/CJ/CJFIELDS/BioPerl-1.6.901.tar.gz Checksum for /Users/fly818/var/cpan/sources/authors/id/C/CJ/CJFIELDS/BioPerl-1.6.901.tar.gz ok Will not use Archive::Tar, need 1.00 BioPerl-1.6.901 BioPerl-1.6.901/AUTHORS BioPerl-1.6.901/BioPerl.pm BioPerl-1.6.901/BUGS BioPerl-1.6.901/Build.PL BioPerl-1.6.901/Changes BioPerl-1.6.901/DEPENDENCIES BioPerl-1.6.901/DEPRECATED BioPerl-1.6.901/INSTALL BioPerl-1.6.901/INSTALL.SKIP BioPerl-1.6.901/INSTALL.WIN BioPerl-1.6.901/LICENSE BioPerl-1.6.901/MANIFEST BioPerl-1.6.901/META.json BioPerl-1.6.901/META.yml BioPerl-1.6.901/README BioPerl-1.6.901/Bio BioPerl-1.6.901/Bio/AlignIO.pm BioPerl-1.6.901/Bio/AnalysisI.pm BioPerl-1.6.901/Bio/AnalysisParserI.pm BioPerl-1.6.901/Bio/AnalysisResultI.pm BioPerl-1.6.901/Bio/AnnotatableI.pm 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BioPerl-1.6.901/t/Tools/EUtilities/elink_neighbor.t BioPerl-1.6.901/t/Tools/EUtilities/elink_neighbor_history.t BioPerl-1.6.901/t/Tools/EUtilities/elink_scores.t BioPerl-1.6.901/t/Tools/EUtilities/epost.t BioPerl-1.6.901/t/Tools/EUtilities/esearch.t BioPerl-1.6.901/t/Tools/EUtilities/espell.t BioPerl-1.6.901/t/Tools/EUtilities/esummary.t BioPerl-1.6.901/t/Tools/EUtilities/EUtilParameters.t BioPerl-1.6.901/t/Tools/Phylo BioPerl-1.6.901/t/Tools/Phylo/Gerp.t BioPerl-1.6.901/t/Tools/Phylo/Molphy.t BioPerl-1.6.901/t/Tools/Phylo/PAML.t BioPerl-1.6.901/t/Tools/Phylo/Phylip BioPerl-1.6.901/t/Tools/Phylo/Phylip/ProtDist.t BioPerl-1.6.901/t/Tools/Run BioPerl-1.6.901/t/Tools/Run/Dummy.pm BioPerl-1.6.901/t/Tools/Run/RemoteBlast.t BioPerl-1.6.901/t/Tools/Run/RemoteBlast_rpsblast.t BioPerl-1.6.901/t/Tools/Run/StandAloneBlast.t BioPerl-1.6.901/t/Tools/Run/WBCommandExts.t BioPerl-1.6.901/t/Tools/Run/WrapperBase.t BioPerl-1.6.901/t/Tools/Run/Dummy BioPerl-1.6.901/t/Tools/Run/Dummy/Config.pm BioPerl-1.6.901/t/Tools/Signalp BioPerl-1.6.901/t/Tools/Signalp/ExtendedSignalp.t BioPerl-1.6.901/t/Tools/Spidey BioPerl-1.6.901/t/Tools/Spidey/Spidey.t BioPerl-1.6.901/t/Tree BioPerl-1.6.901/t/Tree/Compatible.t BioPerl-1.6.901/t/Tree/Node.t BioPerl-1.6.901/t/Tree/RandomTreeFactory.t BioPerl-1.6.901/t/Tree/Tree.t BioPerl-1.6.901/t/Tree/TreeIO.t BioPerl-1.6.901/t/Tree/TreeStatistics.t BioPerl-1.6.901/t/Tree/PhyloNetwork BioPerl-1.6.901/t/Tree/PhyloNetwork/Factory.t BioPerl-1.6.901/t/Tree/PhyloNetwork/GraphViz.t BioPerl-1.6.901/t/Tree/PhyloNetwork/MuVector.t BioPerl-1.6.901/t/Tree/PhyloNetwork/PhyloNetwork.t BioPerl-1.6.901/t/Tree/PhyloNetwork/RandomFactory.t BioPerl-1.6.901/t/Tree/PhyloNetwork/TreeFactory.t BioPerl-1.6.901/t/Tree/TreeIO BioPerl-1.6.901/t/Tree/TreeIO/lintree.t BioPerl-1.6.901/t/Tree/TreeIO/newick.t BioPerl-1.6.901/t/Tree/TreeIO/nexml.t BioPerl-1.6.901/t/Tree/TreeIO/nexus.t BioPerl-1.6.901/t/Tree/TreeIO/nhx.t BioPerl-1.6.901/t/Tree/TreeIO/phyloxml.t BioPerl-1.6.901/t/Tree/TreeIO/svggraph.t BioPerl-1.6.901/t/Tree/TreeIO/tabtree.t BioPerl-1.6.901/t/Variation BioPerl-1.6.901/t/Variation/AAChange.t BioPerl-1.6.901/t/Variation/AAReverseMutate.t BioPerl-1.6.901/t/Variation/Allele.t BioPerl-1.6.901/t/Variation/DNAMutation.t BioPerl-1.6.901/t/Variation/RNAChange.t BioPerl-1.6.901/t/Variation/SeqDiff.t BioPerl-1.6.901/t/Variation/SNP.t BioPerl-1.6.901/t/Variation/Variation_IO.t /usr/bin/tar: Read 4096 bytes from - ---- Unsatisfied dependencies detected during ---- ---- CJFIELDS/BioPerl-1.6.901.tar.gz ---- Module::Build [build_requires] Running make test Make had some problems, won't test Delayed until after prerequisites Running test for module 'Module::Build' Running make for D/DA/DAGOLDEN/Module-Build-0.3800.tar.gz Checksum for /Users/fly818/var/cpan/sources/authors/id/D/DA/DAGOLDEN/Module-Build-0.3800.tar.gz ok Will not use Archive::Tar, need 1.00 Module-Build-0.3800 Module-Build-0.3800/Changes Module-Build-0.3800/MANIFEST Module-Build-0.3800/META.json Module-Build-0.3800/README Module-Build-0.3800/LICENSE Module-Build-0.3800/Build.PL Module-Build-0.3800/META.yml Module-Build-0.3800/INSTALL Module-Build-0.3800/Makefile.PL Module-Build-0.3800/t Module-Build-0.3800/t/perl_mb_opt.t Module-Build-0.3800/t/write_default_maniskip.t Module-Build-0.3800/t/help.t Module-Build-0.3800/t/tilde.t Module-Build-0.3800/t/sample.t Module-Build-0.3800/t/versions.t Module-Build-0.3800/t/compat.t Module-Build-0.3800/t/parents.t Module-Build-0.3800/t/pod_parser.t Module-Build-0.3800/t/install_extra_target.t Module-Build-0.3800/t/manifypods.t Module-Build-0.3800/t/metadata.t Module-Build-0.3800/t/PL_files.t Module-Build-0.3800/t/files.t Module-Build-0.3800/t/destinations.t Module-Build-0.3800/t/ppm.t Module-Build-0.3800/t/par.t Module-Build-0.3800/t/test_file_exts.t Module-Build-0.3800/t/resume.t Module-Build-0.3800/t/xs.t Module-Build-0.3800/t/install.t Module-Build-0.3800/t/script_dist.t Module-Build-0.3800/t/00-compile.t Module-Build-0.3800/t/notes.t Module-Build-0.3800/t/runthrough.t Module-Build-0.3800/t/mymeta.t Module-Build-0.3800/t/use_tap_harness.t Module-Build-0.3800/t/test_type.t Module-Build-0.3800/t/test_types.t Module-Build-0.3800/t/basic.t Module-Build-0.3800/t/new_from_context.t Module-Build-0.3800/t/ext.t Module-Build-0.3800/t/bundle_inc.t Module-Build-0.3800/t/README.pod Module-Build-0.3800/t/add_property.t Module-Build-0.3800/t/debug.t Module-Build-0.3800/t/metadata2.t Module-Build-0.3800/t/signature.t Module-Build-0.3800/t/extend.t Module-Build-0.3800/t/properties Module-Build-0.3800/t/properties/module_name.t Module-Build-0.3800/t/properties/share_dir.t Module-Build-0.3800/t/properties/dist_suffix.t Module-Build-0.3800/t/properties/needs_compiler.t Module-Build-0.3800/t/properties/requires.t Module-Build-0.3800/t/properties/license.t Module-Build-0.3800/t/properties/release_status.t Module-Build-0.3800/t/lib Module-Build-0.3800/t/lib/DistGen.pm Module-Build-0.3800/t/lib/MBTest.pm Module-Build-0.3800/t/lib/Module Module-Build-0.3800/t/lib/Module/Signature.pm Module-Build-0.3800/t/lib/Software Module-Build-0.3800/t/lib/Software/License Module-Build-0.3800/t/lib/Software/License/VaporWare.pm Module-Build-0.3800/t/bundled Module-Build-0.3800/t/bundled/Tie Module-Build-0.3800/t/bundled/Tie/CPHash.pm Module-Build-0.3800/t/bundled/Software Module-Build-0.3800/t/bundled/Software/License.pm Module-Build-0.3800/t/compat Module-Build-0.3800/t/compat/exit.t Module-Build-0.3800/t/actions Module-Build-0.3800/t/actions/installdeps.t Module-Build-0.3800/t/actions/manifest_skip.t Module-Build-0.3800/lib Module-Build-0.3800/lib/Module Module-Build-0.3800/lib/Module/Build.pm Module-Build-0.3800/lib/Module/Build Module-Build-0.3800/lib/Module/Build/PodParser.pm Module-Build-0.3800/lib/Module/Build/Bundling.pod Module-Build-0.3800/lib/Module/Build/Base.pm Module-Build-0.3800/lib/Module/Build/YAML.pm Module-Build-0.3800/lib/Module/Build/API.pod Module-Build-0.3800/lib/Module/Build/Version.pm Module-Build-0.3800/lib/Module/Build/Compat.pm Module-Build-0.3800/lib/Module/Build/ModuleInfo.pm Module-Build-0.3800/lib/Module/Build/Cookbook.pm Module-Build-0.3800/lib/Module/Build/Config.pm Module-Build-0.3800/lib/Module/Build/PPMMaker.pm Module-Build-0.3800/lib/Module/Build/Notes.pm Module-Build-0.3800/lib/Module/Build/Dumper.pm Module-Build-0.3800/lib/Module/Build/Authoring.pod Module-Build-0.3800/lib/Module/Build/Platform Module-Build-0.3800/lib/Module/Build/Platform/darwin.pm Module-Build-0.3800/lib/Module/Build/Platform/Unix.pm Module-Build-0.3800/lib/Module/Build/Platform/EBCDIC.pm Module-Build-0.3800/lib/Module/Build/Platform/aix.pm Module-Build-0.3800/lib/Module/Build/Platform/MPEiX.pm Module-Build-0.3800/lib/Module/Build/Platform/Default.pm Module-Build-0.3800/lib/Module/Build/Platform/MacOS.pm Module-Build-0.3800/lib/Module/Build/Platform/Windows.pm Module-Build-0.3800/lib/Module/Build/Platform/Amiga.pm Module-Build-0.3800/lib/Module/Build/Platform/cygwin.pm Module-Build-0.3800/lib/Module/Build/Platform/VMS.pm Module-Build-0.3800/lib/Module/Build/Platform/RiscOS.pm Module-Build-0.3800/lib/Module/Build/Platform/VOS.pm Module-Build-0.3800/lib/Module/Build/Platform/os2.pm Module-Build-0.3800/lib/inc Module-Build-0.3800/lib/inc/latest.pm Module-Build-0.3800/lib/inc/latest Module-Build-0.3800/lib/inc/latest/private.pm Module-Build-0.3800/inc Module-Build-0.3800/inc/MBVersion.pm Module-Build-0.3800/inc/bootstrap.pl Module-Build-0.3800/inc/Perl Module-Build-0.3800/inc/Perl/OSType.pm Module-Build-0.3800/inc/Module Module-Build-0.3800/inc/Module/Metadata.pm Module-Build-0.3800/bin Module-Build-0.3800/bin/config_data Module-Build-0.3800/contrib Module-Build-0.3800/contrib/bash_completion.module-build /usr/bin/tar: Read 1536 bytes from - CPAN.pm: Going to build D/DA/DAGOLDEN/Module-Build-0.3800.tar.gz >>> /Users/fly818/bin/perl Makefile.PL # running Build.PL Checking optional features... inc_bundling_support....disabled requires: ! ExtUtils::Install (1.50) is installed, but we need version >= 1.54 ! ExtUtils::Installed (1.43) is installed, but we need version >= 1.999 ERRORS/WARNINGS FOUND IN PREREQUISITES. You may wish to install the versions of the modules indicated above before proceeding with this installation Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'Module-Build' version '0.3800' >>> make /Users/fly818/bin/perl Build --makefile_env_macros 1 Building Module-Build DAGOLDEN/Module-Build-0.3800.tar.gz make -- OK Running make test >>> make test TEST_VERBOSE=1 /Users/fly818/bin/perl Build --makefile_env_macros 1 test t/00-compile.t ................. 1..28 ok 1 - compiling lib/Module/Build.pm ok 2 - compiling lib/Module/Build/Base.pm ok 3 - compiling lib/Module/Build/Compat.pm ok 4 - compiling lib/Module/Build/Config.pm ok 5 - compiling lib/Module/Build/Cookbook.pm ok 6 - compiling lib/Module/Build/Dumper.pm ok 7 - compiling lib/Module/Build/ModuleInfo.pm ok 8 - compiling lib/Module/Build/Notes.pm ok 9 - compiling lib/Module/Build/PPMMaker.pm ok 10 - compiling lib/Module/Build/Platform/Amiga.pm ok 11 - compiling lib/Module/Build/Platform/Default.pm ok 12 - compiling lib/Module/Build/Platform/EBCDIC.pm ok 13 - compiling lib/Module/Build/Platform/MPEiX.pm ok 14 - compiling lib/Module/Build/Platform/MacOS.pm ok 15 - compiling lib/Module/Build/Platform/RiscOS.pm ok 16 - compiling lib/Module/Build/Platform/Unix.pm ok 17 - compiling lib/Module/Build/Platform/VMS.pm ok 18 - compiling lib/Module/Build/Platform/VOS.pm ok 19 - compiling lib/Module/Build/Platform/Windows.pm ok 20 - compiling lib/Module/Build/Platform/aix.pm ok 21 - compiling lib/Module/Build/Platform/cygwin.pm ok 22 - compiling lib/Module/Build/Platform/darwin.pm ok 23 - compiling lib/Module/Build/Platform/os2.pm ok 24 - compiling lib/Module/Build/PodParser.pm ok 25 - compiling lib/Module/Build/Version.pm ok 26 - compiling lib/Module/Build/YAML.pm ok 27 - compiling lib/inc/latest.pm ok 28 - compiling lib/inc/latest/private.pm ok t/PL_files.t ................... 1..8 Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'Simple' version '0.01' Building Simple Installing test_install/lib/perl5/Bar.pm Installing test_install/lib/perl5/Simple.pm Installing test_install/man/man3/Simple.3 Installing test_install/html/site/lib/Simple.html Installing test_install/bin/foo Writing test_install/lib/perl5/darwin-thread-multi-2level/auto/Simple/.packlist Building ActivePerl Table of Contents For ActivePerl's PPM: touch '/Users/fly818/ap818/lib/perllocal.pod' ok 1 - Generated PL_files installed from bin ok 2 - and from lib ok 3 - PL_files not installed from bin ok 4 - nor from lib ok 5 - Generated bin contains correct content ok 6 - so does the lib Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'Simple' version '0.01' ok 7 - special PL file ran ok 8 - generated special file not added to cleanup ok t/actions/installdeps.t ........ 1..6 ok 1 - The object isa Module::Build ok 2 - cpan_client is mocked with perl ok 3 - ran mocked Build installdeps ok 4 - saw File::Spec prereq ok 5 - saw Getopt::Long prereq ok 6 - Build installdeps with bad cpan_client dies ok t/actions/manifest_skip.t ...... 1..7 ok 1 - MANIFEST.SKIP doesn't exist at start ok 2 - The object isa Module::Build ok 3 - 'Build manifest_skip' creates MANIFEST.SKIP ok 4 - Saw creation message ok 5 - Running it again warns about pre-existing MANIFEST.SKIP ok 6 - File does not appear modified ok 7 - MANIFEST.SKIP still exists after distclean ok t/add_property.t ............... 1..27 ok 1 - Create new build object ok 2 - Property "foo" should be undef ok 3 - Set "foo" ok 4 - Now "foo" should have new value ok 5 - Property "bar" should be its default ok 6 - Set "bar" ok 7 - Now "bar" should have new value ok 8 - Property "check" should be its default ok 9 - Should get an error for an invalid value ok 10 - It should be the correct error ok 11 - Property "code" should have its code value ok 12 - Property "hash" should be default ok 13 - Should be able to get key in hash ok 14 - Add a key to the hash prop ok 15 - New key should be in hash ok 16 - Should get exception for assigning invalid hash ok 17 - It should be the correct error ok 18 - Should get exception for assigning an array for a hash ok 19 - It should be the proper error ok 20 - Should be able to set hash to undef ok 21 - Property "installdirs" should be default ok 22 - Set "installdirst" to "core" ok 23 - Now "installdirs" should be "core" ok 24 - Should have caught exception setting "installdirs" to "perl" ok 25 - And it should suggest "core" in the error message ok 26 - Should catch exception for invalid "installdirs" value ok 27 - And it should suggest the proper values in the error message ok t/basic.t ...................... 1..58 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 Cleaning up build files Cleaning up configuration files ok 12 ok 13 ok 14 ok 15 ok 16 Cleaning up build files Cleaning up configuration files ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 Cleaning up build files Cleaning up configuration files Checking whether your kit is complete... Looks good Checking prerequisites... Looks good Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'Simple' version '0.01' ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 - bar ok 30 - bat ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 - dist_author converted to array if simple string ok 43 ok 44 ok 45 ok 46 - Should split shell string into list ok 47 - Should split shell string into list Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'Simple' version '0.01' ok 48 ok 49 - Should split shell string into list ok 50 - Should split shell string into list ok 51 ok 52 - Should have include dirs ok 53 ok 54 - Should have string include dir Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'Simple' version '0.01' ok 55 ok 56 - Should have include dirs Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'Simple' version '0.01' ok 57 ok 58 - Should have single include dir ok t/bundle_inc.t ................. skipped: $ENV{MB_TEST_EXPERIMENTAL} is not set make: *** [test] Terminated Timeout (max run time is 300s) /Users/fly818/bin/perl killed by signal 15