PATH=/usr/bin:/bin:/home/fly1200/var/megalib/bin
Start 2014-10-17T08:14:10
ActivePerl-1200 CPAN-2.00
Reading '/home/fly1200/var/cpan/Metadata'
  Database was generated on Fri, 17 Oct 2014 13:29:02 GMT
Running make for L/LE/LEPREVOST/MS2-Parser-0.061.tar.gz
Fetching with LWP:
http://cpan.nas1.activestate.com/authors/id/L/LE/LEPREVOST/MS2-Parser-0.061.tar.gz
Checksum for /home/fly1200/var/cpan/sources/authors/id/L/LE/LEPREVOST/MS2-Parser-0.061.tar.gz ok
MS2-Parser-0.061/
MS2-Parser-0.061/README
MS2-Parser-0.061/ignore.txt
MS2-Parser-0.061/MANIFEST
MS2-Parser-0.061/Changes
MS2-Parser-0.061/META.yml
MS2-Parser-0.061/t/
MS2-Parser-0.061/t/00-load.t
MS2-Parser-0.061/lib/
MS2-Parser-0.061/lib/MS2/
MS2-Parser-0.061/lib/MS2/Scan.pm
MS2-Parser-0.061/lib/MS2/Parser.pm
MS2-Parser-0.061/lib/MS2/Header.pm
MS2-Parser-0.061/Makefile.PL
MS2-Parser-0.061/README.md
MS2-Parser-0.061/META.json

  CPAN.pm: Building L/LE/LEPREVOST/MS2-Parser-0.061.tar.gz

>>> /home/fly1200/ap1200/bin/perl-static Makefile.PL
closedir() attempted on invalid dirhandle GEN0 at /home/fly1200/ap1200/lib/DirHandle.pm line 65.
Checking if your kit is complete...
Warning: the following files are missing in your kit:
	t/boilerplate.t
	t/manifest.t
	t/pod-coverage.t
	t/pod.t
Please inform the author.
Generating a Unix-style Makefile
Writing Makefile for MS2::Parser
Writing MYMETA.yml and MYMETA.json
>>> make
Use of uninitialized value $bit in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 31.
Use of uninitialized value $warnings::LAST_BIT in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 41.
Use of uninitialized value $warnings::Bits{"all"} in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 41.
Use of uninitialized value $warnings::Bits{"all"} in scalar assignment at /home/fly1200/ap1200/lib/warnings/register.pm line 41.
Use of uninitialized value $warnings::DeadBits{"all"} in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 47.
Use of uninitialized value $warnings::DeadBits{"all"} in scalar assignment at /home/fly1200/ap1200/lib/warnings/register.pm line 47.
Use of uninitialized value $bit in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 31.
Use of uninitialized value $warnings::LAST_BIT in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 41.
Use of uninitialized value $warnings::Bits{"all"} in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 41.
Use of uninitialized value $warnings::Bits{"all"} in scalar assignment at /home/fly1200/ap1200/lib/warnings/register.pm line 41.
Use of uninitialized value $warnings::DeadBits{"all"} in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 47.
Use of uninitialized value $warnings::DeadBits{"all"} in scalar assignment at /home/fly1200/ap1200/lib/warnings/register.pm line 47.
Use of uninitialized value $bit in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 31.
Use of uninitialized value $warnings::LAST_BIT in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 41.
Use of uninitialized value $warnings::Bits{"all"} in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 41.
Use of uninitialized value $warnings::Bits{"all"} in scalar assignment at /home/fly1200/ap1200/lib/warnings/register.pm line 41.
Use of uninitialized value $warnings::DeadBits{"all"} in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 47.
Use of uninitialized value $warnings::DeadBits{"all"} in scalar assignment at /home/fly1200/ap1200/lib/warnings/register.pm line 47.
Use of uninitialized value $bit in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 31.
Use of uninitialized value $warnings::LAST_BIT in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 41.
Use of uninitialized value $warnings::Bits{"all"} in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 41.
Use of uninitialized value $warnings::Bits{"all"} in scalar assignment at /home/fly1200/ap1200/lib/warnings/register.pm line 41.
Use of uninitialized value $warnings::DeadBits{"all"} in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 47.
Use of uninitialized value $warnings::DeadBits{"all"} in scalar assignment at /home/fly1200/ap1200/lib/warnings/register.pm line 47.
Use of uninitialized value $bit in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 31.
Use of uninitialized value $warnings::LAST_BIT in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 41.
Use of uninitialized value $warnings::Bits{"all"} in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 41.
Use of uninitialized value $warnings::Bits{"all"} in scalar assignment at /home/fly1200/ap1200/lib/warnings/register.pm line 41.
Use of uninitialized value $warnings::DeadBits{"all"} in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 47.
Use of uninitialized value $warnings::DeadBits{"all"} in scalar assignment at /home/fly1200/ap1200/lib/warnings/register.pm line 47.
Use of uninitialized value $bit in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 31.
Use of uninitialized value $warnings::LAST_BIT in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 41.
Use of uninitialized value $warnings::Bits{"all"} in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 41.
Use of uninitialized value $warnings::Bits{"all"} in scalar assignment at /home/fly1200/ap1200/lib/warnings/register.pm line 41.
Use of uninitialized value $warnings::DeadBits{"all"} in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 47.
Use of uninitialized value $warnings::DeadBits{"all"} in scalar assignment at /home/fly1200/ap1200/lib/warnings/register.pm line 47.
Use of uninitialized value $bit in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 31.
Use of uninitialized value $warnings::LAST_BIT in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 41.
Use of uninitialized value $warnings::Bits{"all"} in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 41.
Use of uninitialized value $warnings::Bits{"all"} in scalar assignment at /home/fly1200/ap1200/lib/warnings/register.pm line 41.
Use of uninitialized value $warnings::DeadBits{"all"} in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 47.
Use of uninitialized value $warnings::DeadBits{"all"} in scalar assignment at /home/fly1200/ap1200/lib/warnings/register.pm line 47.
Use of uninitialized value $bit in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 31.
Use of uninitialized value $warnings::LAST_BIT in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 41.
Use of uninitialized value $warnings::Bits{"all"} in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 41.
Use of uninitialized value $warnings::Bits{"all"} in scalar assignment at /home/fly1200/ap1200/lib/warnings/register.pm line 41.
Use of uninitialized value $warnings::DeadBits{"all"} in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 47.
Use of uninitialized value $warnings::DeadBits{"all"} in scalar assignment at /home/fly1200/ap1200/lib/warnings/register.pm line 47.
cp lib/MS2/Parser.pm blib/lib/MS2/Parser.pm
cp lib/MS2/Scan.pm blib/lib/MS2/Scan.pm
cp lib/MS2/Header.pm blib/lib/MS2/Header.pm
Use of uninitialized value $bit in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 31.
Use of uninitialized value $warnings::LAST_BIT in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 41.
Use of uninitialized value $warnings::Bits{"all"} in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 41.
Use of uninitialized value $warnings::Bits{"all"} in scalar assignment at /home/fly1200/ap1200/lib/warnings/register.pm line 41.
Use of uninitialized value $warnings::DeadBits{"all"} in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 47.
Use of uninitialized value $warnings::DeadBits{"all"} in scalar assignment at /home/fly1200/ap1200/lib/warnings/register.pm line 47.
Manifying blib/man3/MS2::Parser.3
  LEPREVOST/MS2-Parser-0.061.tar.gz
  make -- OK
Running make test
>>> make test TEST_VERBOSE=1
PERL_DL_NONLAZY=1 /home/fly1200/ap1200/bin/perl-static "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t
Use of uninitialized value $bit in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 31.
Use of uninitialized value $warnings::LAST_BIT in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 41.
Use of uninitialized value $warnings::Bits{"all"} in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 41.
Use of uninitialized value $warnings::Bits{"all"} in scalar assignment at /home/fly1200/ap1200/lib/warnings/register.pm line 41.
Use of uninitialized value $warnings::DeadBits{"all"} in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 47.
Use of uninitialized value $warnings::DeadBits{"all"} in scalar assignment at /home/fly1200/ap1200/lib/warnings/register.pm line 47.
Subroutine IPC::Open3::xclose redefined at /home/fly1200/var/megalib/TAP/Parser/Iterator/Process.pm line 146.
Use of uninitialized value $bit in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 31.
Use of uninitialized value $warnings::LAST_BIT in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 41.
Use of uninitialized value $warnings::Bits{"all"} in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 41.
Use of uninitialized value $warnings::Bits{"all"} in scalar assignment at /home/fly1200/ap1200/lib/warnings/register.pm line 41.
Use of uninitialized value $warnings::DeadBits{"all"} in vec at /home/fly1200/ap1200/lib/warnings/register.pm line 47.
Use of uninitialized value $warnings::DeadBits{"all"} in scalar assignment at /home/fly1200/ap1200/lib/warnings/register.pm line 47.
# Testing MS2::Parser 0.061, Perl 5.012000, /home/fly1200/ap1200/bin/perl-static
t/00-load.t .. 
ok 1 - use MS2::Parser;
ok 2 - use MS2::Header;
ok 3 - use MS2::Scan;
1..3
ok
All tests successful.
Files=1, Tests=3,  0 wallclock secs ( 0.02 usr  0.00 sys +  0.40 cusr  0.03 csys =  0.45 CPU)
Result: PASS
  LEPREVOST/MS2-Parser-0.061.tar.gz
  make test TEST_VERBOSE=1 -- OK
<SOFTPKG NAME="MS2-Parser" VERSION="0.061" DATE="2014-10-16">
  <AUTHOR CPAN="LEPREVOST">Felipe da Veiga Leprevost &lt;leprevost@cpan.org></AUTHOR>
  <ABSTRACT>A parser for MS2 files, commonly used in mass spectrometry based proteomics projects.</ABSTRACT>
  <ARCHITECTURE NAME="i686-linux-thread-multi-5.12"/>
  <CODEBASE HREF="MS2-Parser-0.061.tar.gz"/>
  <PROVIDE NAME="MS2::Parser" VERSION="0.061"/>
  <PROVIDE NAME="MS2::Scan"/>
  <PROVIDE NAME="MS2::Header"/>
  <!-- Built 2014-10-17 with ActivePerl-1200 on cpanfly-suse83 (SuSE Linux 8.2 (i586), glibc 2.3.2 stable) log MS2-Parser-0.061.d/log-20141017T081409.txt -->
</SOFTPKG>
>>> (cd /home/fly1200/var/cpan/build/MS2-Parser-0.061-CCUAfB && tar cvf - MS2-Parser-0.061.ppd blib) | gzip -c >/home/fly1200/var/REPO/L/LE/LEPREVOST/MS2-Parser-0.061.tar.gz
MS2-Parser-0.061.ppd
blib/
blib/lib/
blib/lib/MS2/
blib/lib/MS2/Parser.pm
blib/lib/MS2/Scan.pm
blib/lib/MS2/Header.pm
blib/man3/
blib/man3/MS2::Parser.3
>>> mv /home/fly1200/var/cpan/build/MS2-Parser-0.061-CCUAfB/MS2-Parser-0.061.ppd /home/fly1200/var/REPO/L/LE/LEPREVOST
VmSize:	  126924 kB
Finished 2014-10-17T08:14:15