PATH=/opt/SUNWspro/bin:/usr/local/bin:/opt/csw/bin:/usr/ccs/bin:/usr/bin:/usr/sbin Start 2014-10-17T02:25:16 ActivePerl-1200 CPAN-2.00 Reading '/export/home/fly1264/var/cpan/Metadata' Database was generated on Fri, 17 Oct 2014 07:53:13 GMT Running make for L/LE/LEPREVOST/MS2-Parser-0.061.tar.gz Fetching with LWP: http://cpan.nas1.activestate.com/authors/id/L/LE/LEPREVOST/MS2-Parser-0.061.tar.gz Checksum for /export/home/fly1264/var/cpan/sources/authors/id/L/LE/LEPREVOST/MS2-Parser-0.061.tar.gz ok MS2-Parser-0.061/ MS2-Parser-0.061/README MS2-Parser-0.061/ignore.txt MS2-Parser-0.061/MANIFEST MS2-Parser-0.061/Changes MS2-Parser-0.061/META.yml MS2-Parser-0.061/t/ MS2-Parser-0.061/t/00-load.t MS2-Parser-0.061/lib/ MS2-Parser-0.061/lib/MS2/ MS2-Parser-0.061/lib/MS2/Scan.pm MS2-Parser-0.061/lib/MS2/Parser.pm MS2-Parser-0.061/lib/MS2/Header.pm MS2-Parser-0.061/Makefile.PL MS2-Parser-0.061/README.md MS2-Parser-0.061/META.json CPAN.pm: Building L/LE/LEPREVOST/MS2-Parser-0.061.tar.gz >>> /export/home/fly1264/bin/perl Makefile.PL closedir() attempted on invalid dirhandle GEN0 at /export/home/fly1264/ap1200/lib/DirHandle.pm line 65. Checking if your kit is complete... Warning: the following files are missing in your kit: t/boilerplate.t t/manifest.t t/pod-coverage.t t/pod.t Please inform the author. Generating a Unix-style Makefile Writing Makefile for MS2::Parser Writing MYMETA.yml and MYMETA.json >>> make Use of uninitialized value $bit in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 31. Use of uninitialized value $warnings::LAST_BIT in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 41. Use of uninitialized value $warnings::Bits{"all"} in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 41. Use of uninitialized value $warnings::Bits{"all"} in scalar assignment at /export/home/fly1264/ap1200/lib/warnings/register.pm line 41. Use of uninitialized value $warnings::DeadBits{"all"} in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 47. Use of uninitialized value $warnings::DeadBits{"all"} in scalar assignment at /export/home/fly1264/ap1200/lib/warnings/register.pm line 47. Use of uninitialized value $bit in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 31. Use of uninitialized value $warnings::LAST_BIT in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 41. Use of uninitialized value $warnings::Bits{"all"} in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 41. Use of uninitialized value $warnings::Bits{"all"} in scalar assignment at /export/home/fly1264/ap1200/lib/warnings/register.pm line 41. Use of uninitialized value $warnings::DeadBits{"all"} in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 47. Use of uninitialized value $warnings::DeadBits{"all"} in scalar assignment at /export/home/fly1264/ap1200/lib/warnings/register.pm line 47. Use of uninitialized value $bit in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 31. Use of uninitialized value $warnings::LAST_BIT in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 41. Use of uninitialized value $warnings::Bits{"all"} in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 41. Use of uninitialized value $warnings::Bits{"all"} in scalar assignment at /export/home/fly1264/ap1200/lib/warnings/register.pm line 41. Use of uninitialized value $warnings::DeadBits{"all"} in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 47. Use of uninitialized value $warnings::DeadBits{"all"} in scalar assignment at /export/home/fly1264/ap1200/lib/warnings/register.pm line 47. Use of uninitialized value $bit in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 31. Use of uninitialized value $warnings::LAST_BIT in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 41. Use of uninitialized value $warnings::Bits{"all"} in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 41. Use of uninitialized value $warnings::Bits{"all"} in scalar assignment at /export/home/fly1264/ap1200/lib/warnings/register.pm line 41. Use of uninitialized value $warnings::DeadBits{"all"} in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 47. Use of uninitialized value $warnings::DeadBits{"all"} in scalar assignment at /export/home/fly1264/ap1200/lib/warnings/register.pm line 47. Use of uninitialized value $bit in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 31. Use of uninitialized value $warnings::LAST_BIT in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 41. Use of uninitialized value $warnings::Bits{"all"} in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 41. Use of uninitialized value $warnings::Bits{"all"} in scalar assignment at /export/home/fly1264/ap1200/lib/warnings/register.pm line 41. Use of uninitialized value $warnings::DeadBits{"all"} in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 47. Use of uninitialized value $warnings::DeadBits{"all"} in scalar assignment at /export/home/fly1264/ap1200/lib/warnings/register.pm line 47. Use of uninitialized value $bit in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 31. Use of uninitialized value $warnings::LAST_BIT in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 41. Use of uninitialized value $warnings::Bits{"all"} in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 41. Use of uninitialized value $warnings::Bits{"all"} in scalar assignment at /export/home/fly1264/ap1200/lib/warnings/register.pm line 41. Use of uninitialized value $warnings::DeadBits{"all"} in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 47. Use of uninitialized value $warnings::DeadBits{"all"} in scalar assignment at /export/home/fly1264/ap1200/lib/warnings/register.pm line 47. Use of uninitialized value $bit in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 31. Use of uninitialized value $warnings::LAST_BIT in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 41. Use of uninitialized value $warnings::Bits{"all"} in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 41. Use of uninitialized value $warnings::Bits{"all"} in scalar assignment at /export/home/fly1264/ap1200/lib/warnings/register.pm line 41. Use of uninitialized value $warnings::DeadBits{"all"} in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 47. Use of uninitialized value $warnings::DeadBits{"all"} in scalar assignment at /export/home/fly1264/ap1200/lib/warnings/register.pm line 47. Use of uninitialized value $bit in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 31. Use of uninitialized value $warnings::LAST_BIT in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 41. Use of uninitialized value $warnings::Bits{"all"} in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 41. Use of uninitialized value $warnings::Bits{"all"} in scalar assignment at /export/home/fly1264/ap1200/lib/warnings/register.pm line 41. Use of uninitialized value $warnings::DeadBits{"all"} in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 47. Use of uninitialized value $warnings::DeadBits{"all"} in scalar assignment at /export/home/fly1264/ap1200/lib/warnings/register.pm line 47. cp lib/MS2/Parser.pm blib/lib/MS2/Parser.pm cp lib/MS2/Scan.pm blib/lib/MS2/Scan.pm cp lib/MS2/Header.pm blib/lib/MS2/Header.pm Use of uninitialized value $bit in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 31. Use of uninitialized value $warnings::LAST_BIT in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 41. Use of uninitialized value $warnings::Bits{"all"} in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 41. Use of uninitialized value $warnings::Bits{"all"} in scalar assignment at /export/home/fly1264/ap1200/lib/warnings/register.pm line 41. Use of uninitialized value $warnings::DeadBits{"all"} in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 47. Use of uninitialized value $warnings::DeadBits{"all"} in scalar assignment at /export/home/fly1264/ap1200/lib/warnings/register.pm line 47. Manifying blib/man3/MS2::Parser.3 LEPREVOST/MS2-Parser-0.061.tar.gz make -- OK Running make test >>> make test TEST_VERBOSE=1 PERL_DL_NONLAZY=1 /export/home/fly1264/bin/perl "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t Use of uninitialized value $bit in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 31. Use of uninitialized value $warnings::LAST_BIT in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 41. Use of uninitialized value $warnings::Bits{"all"} in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 41. Use of uninitialized value $warnings::Bits{"all"} in scalar assignment at /export/home/fly1264/ap1200/lib/warnings/register.pm line 41. Use of uninitialized value $warnings::DeadBits{"all"} in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 47. Use of uninitialized value $warnings::DeadBits{"all"} in scalar assignment at /export/home/fly1264/ap1200/lib/warnings/register.pm line 47. Subroutine IPC::Open3::xclose redefined at /export/home/fly1264/var/megalib/TAP/Parser/Iterator/Process.pm line 146. Use of uninitialized value $bit in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 31. Use of uninitialized value $warnings::LAST_BIT in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 41. Use of uninitialized value $warnings::Bits{"all"} in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 41. Use of uninitialized value $warnings::Bits{"all"} in scalar assignment at /export/home/fly1264/ap1200/lib/warnings/register.pm line 41. Use of uninitialized value $warnings::DeadBits{"all"} in vec at /export/home/fly1264/ap1200/lib/warnings/register.pm line 47. Use of uninitialized value $warnings::DeadBits{"all"} in scalar assignment at /export/home/fly1264/ap1200/lib/warnings/register.pm line 47. # Testing MS2::Parser 0.061, Perl 5.012000, /export/home/fly1264/bin/perl t/00-load.t .. ok 1 - use MS2::Parser; ok 2 - use MS2::Header; ok 3 - use MS2::Scan; 1..3 ok All tests successful. Files=1, Tests=3, 1 wallclock secs ( 0.08 usr 0.02 sys + 1.41 cusr 0.09 csys = 1.60 CPU) Result: PASS LEPREVOST/MS2-Parser-0.061.tar.gz make test TEST_VERBOSE=1 -- OK Felipe da Veiga Leprevost <leprevost@cpan.org> A parser for MS2 files, commonly used in mass spectrometry based proteomics projects. >>> (cd /export/home/fly1264/var/cpan/build/MS2-Parser-0.061-RkbsIH && tar cvf - MS2-Parser-0.061.ppd blib) | gzip -c >/export/home/fly1264/var/REPO/L/LE/LEPREVOST/MS2-Parser-0.061.tar.gz MS2-Parser-0.061.ppd blib/ blib/lib/ blib/lib/MS2/ blib/lib/MS2/Parser.pm blib/lib/MS2/Scan.pm blib/lib/MS2/Header.pm blib/man3/ blib/man3/MS2::Parser.3 >>> mv /export/home/fly1264/var/cpan/build/MS2-Parser-0.061-RkbsIH/MS2-Parser-0.061.ppd /export/home/fly1264/var/REPO/L/LE/LEPREVOST Finished 2014-10-17T02:25:32