PATH=/usr/bin:/bin:/home/fly1600/var/megalib/bin Start 2015-09-18T02:08:11 ActivePerl-1600 CPAN-2.00 Reading '/home/fly1600/var/cpan/Metadata' Database was generated on Fri, 18 Sep 2015 05:41:02 GMT Running make for E/ET/ETJ/PDL-Stats-0.73.tar.gz Fetching with LWP: http://cpan.nas1.activestate.com/authors/id/E/ET/ETJ/PDL-Stats-0.73.tar.gz Fetching with LWP: http://cpan.nas1.activestate.com/authors/id/E/ET/ETJ/CHECKSUMS Checksum for /home/fly1600/var/cpan/sources/authors/id/E/ET/ETJ/PDL-Stats-0.73.tar.gz ok PDL-Stats-0.73/ PDL-Stats-0.73/META.json PDL-Stats-0.73/MANIFEST PDL-Stats-0.73/Basic/ PDL-Stats-0.73/Basic/stats_basic.pd PDL-Stats-0.73/Basic/Makefile.PL PDL-Stats-0.73/README.md PDL-Stats-0.73/META.yml PDL-Stats-0.73/TS/ PDL-Stats-0.73/TS/Makefile.PL PDL-Stats-0.73/TS/ts.pd PDL-Stats-0.73/add_doc.pl PDL-Stats-0.73/xt/ PDL-Stats-0.73/xt/00-check-changelog.t PDL-Stats-0.73/GLM/ PDL-Stats-0.73/GLM/glm.pd PDL-Stats-0.73/GLM/Makefile.PL PDL-Stats-0.73/Distr/ PDL-Stats-0.73/Distr/distr.pd PDL-Stats-0.73/Distr/Makefile.PL PDL-Stats-0.73/Distr/t/ PDL-Stats-0.73/Distr/t/stats_distr.t PDL-Stats-0.73/GENERATED/ PDL-Stats-0.73/GENERATED/PDL/ PDL-Stats-0.73/GENERATED/PDL/Stats/ PDL-Stats-0.73/GENERATED/PDL/Stats/TS.pm PDL-Stats-0.73/GENERATED/PDL/Stats/Basic.pm PDL-Stats-0.73/GENERATED/PDL/Stats/GLM.pm PDL-Stats-0.73/GENERATED/PDL/Stats/Kmeans.pm PDL-Stats-0.73/GENERATED/PDL/Stats/Distr.pm PDL-Stats-0.73/GENERATED/PDL/GSL/ PDL-Stats-0.73/GENERATED/PDL/GSL/CDF.pm PDL-Stats-0.73/Changes PDL-Stats-0.73/GSL/ PDL-Stats-0.73/GSL/gsl_cdf.pd PDL-Stats-0.73/GSL/Makefile.PL PDL-Stats-0.73/GSL/t/ PDL-Stats-0.73/GSL/t/cdf.t PDL-Stats-0.73/Makefile.PL PDL-Stats-0.73/Stats.pm PDL-Stats-0.73/t/ PDL-Stats-0.73/t/stats_glm.t PDL-Stats-0.73/t/01-checkmanifest.t PDL-Stats-0.73/t/stats_ts.t PDL-Stats-0.73/t/stats_basic.t PDL-Stats-0.73/t/stats_kmeans.t PDL-Stats-0.73/t/stats_ols_rptd.t PDL-Stats-0.73/Kmeans/ PDL-Stats-0.73/Kmeans/Makefile.PL PDL-Stats-0.73/Kmeans/kmeans.pd CPAN.pm: Building E/ET/ETJ/PDL-Stats-0.73.tar.gz >>> /home/fly1600/ap1600/bin/perl-static Makefile.PL Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for PDL::Stats::Basic no GSL lib, skip PDL::Stats::Distr no GSL lib, skip PDL::Stats::Distr Generating a Unix-style Makefile Writing Makefile for PDL::Stats::GLM Generating a Unix-style Makefile Writing Makefile for PDL::Stats::Kmeans no GSL lib, skip PDL::GSL::CDF no GSL lib, skip PDL::GSL::CDF Generating a Unix-style Makefile Writing Makefile for PDL::Stats::TS Generating a Unix-style Makefile Writing Makefile for PDL::Stats Writing MYMETA.yml and MYMETA.json >>> make cp Stats.pm blib/lib/PDL/Stats.pm cp add_doc.pl blib/lib/PDL/add_doc.pl make[1]: Entering directory `/data/fly1600/cpan/build/PDL-Stats-0.73-W9B9Q5/Basic' "/home/fly1600/ap1600/bin/perl-static" "-I/data/fly1600/megalib" "-MPDL::PP qw/PDL::Stats::Basic PDL::Stats::Basic Basic/" stats_basic.pd cp Basic.pm ../blib/lib/PDL/Stats/Basic.pm Running Mkbootstrap for PDL::Stats::Basic () chmod 644 "Basic.bs" "/home/fly1600/ap1600/bin/perl-static" "/data/fly1600/megalib/ExtUtils/xsubpp" -typemap "/home/fly1600/ap1600/lib/ExtUtils/typemap" -typemap "/data/fly1600/megalib/PDL/Core/typemap.pdl" Basic.xs > Basic.xsc && mv Basic.xsc Basic.c gcc -c "-I/data/fly1600/megalib/PDL/Core" -D_REENTRANT -D_GNU_SOURCE -DUSE_SITECUSTOMIZE -DPERL_RELOCATABLE_INCPUSH -fno-merge-constants -fno-strict-aliasing -pipe -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/home/fly1600/ap1600/lib/CORE" Basic.c rm -f ../blib/arch/auto/PDL/Stats/Basic/Basic.so gcc -shared -O2 Basic.o -o ../blib/arch/auto/PDL/Stats/Basic/Basic.so \ \ chmod 755 ../blib/arch/auto/PDL/Stats/Basic/Basic.so "/home/fly1600/ap1600/bin/perl-static" -MExtUtils::Command::MM -e 'cp_nonempty' -- Basic.bs ../blib/arch/auto/PDL/Stats/Basic/Basic.bs 644 Manifying 1 pod document make[1]: Leaving directory `/data/fly1600/cpan/build/PDL-Stats-0.73-W9B9Q5/Basic' make[1]: Entering directory `/data/fly1600/cpan/build/PDL-Stats-0.73-W9B9Q5/Distr' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/data/fly1600/cpan/build/PDL-Stats-0.73-W9B9Q5/Distr' make[1]: Entering directory `/data/fly1600/cpan/build/PDL-Stats-0.73-W9B9Q5/GLM' "/home/fly1600/ap1600/bin/perl-static" "-I/data/fly1600/megalib" "-MPDL::PP qw/PDL::Stats::GLM PDL::Stats::GLM GLM/" glm.pd cp GLM.pm ../blib/lib/PDL/Stats/GLM.pm Running Mkbootstrap for PDL::Stats::GLM () chmod 644 "GLM.bs" "/home/fly1600/ap1600/bin/perl-static" "/data/fly1600/megalib/ExtUtils/xsubpp" -typemap "/home/fly1600/ap1600/lib/ExtUtils/typemap" -typemap "/data/fly1600/megalib/PDL/Core/typemap.pdl" GLM.xs > GLM.xsc && mv GLM.xsc GLM.c gcc -c "-I/data/fly1600/megalib/PDL/Core" -D_REENTRANT -D_GNU_SOURCE -DUSE_SITECUSTOMIZE -DPERL_RELOCATABLE_INCPUSH -fno-merge-constants -fno-strict-aliasing -pipe -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/home/fly1600/ap1600/lib/CORE" GLM.c rm -f ../blib/arch/auto/PDL/Stats/GLM/GLM.so gcc -shared -O2 GLM.o -o ../blib/arch/auto/PDL/Stats/GLM/GLM.so \ \ chmod 755 ../blib/arch/auto/PDL/Stats/GLM/GLM.so "/home/fly1600/ap1600/bin/perl-static" -MExtUtils::Command::MM -e 'cp_nonempty' -- GLM.bs ../blib/arch/auto/PDL/Stats/GLM/GLM.bs 644 Manifying 1 pod document make[1]: Leaving directory `/data/fly1600/cpan/build/PDL-Stats-0.73-W9B9Q5/GLM' make[1]: Entering directory `/data/fly1600/cpan/build/PDL-Stats-0.73-W9B9Q5/Kmeans' "/home/fly1600/ap1600/bin/perl-static" "-I/data/fly1600/megalib" "-MPDL::PP qw/PDL::Stats::Kmeans PDL::Stats::Kmeans Kmeans/" kmeans.pd cp Kmeans.pm ../blib/lib/PDL/Stats/Kmeans.pm Running Mkbootstrap for PDL::Stats::Kmeans () chmod 644 "Kmeans.bs" "/home/fly1600/ap1600/bin/perl-static" "/data/fly1600/megalib/ExtUtils/xsubpp" -typemap "/home/fly1600/ap1600/lib/ExtUtils/typemap" -typemap "/data/fly1600/megalib/PDL/Core/typemap.pdl" Kmeans.xs > Kmeans.xsc && mv Kmeans.xsc Kmeans.c gcc -c "-I/data/fly1600/megalib/PDL/Core" -D_REENTRANT -D_GNU_SOURCE -DUSE_SITECUSTOMIZE -DPERL_RELOCATABLE_INCPUSH -fno-merge-constants -fno-strict-aliasing -pipe -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/home/fly1600/ap1600/lib/CORE" Kmeans.c rm -f ../blib/arch/auto/PDL/Stats/Kmeans/Kmeans.so gcc -shared -O2 Kmeans.o -o ../blib/arch/auto/PDL/Stats/Kmeans/Kmeans.so \ \ chmod 755 ../blib/arch/auto/PDL/Stats/Kmeans/Kmeans.so "/home/fly1600/ap1600/bin/perl-static" -MExtUtils::Command::MM -e 'cp_nonempty' -- Kmeans.bs ../blib/arch/auto/PDL/Stats/Kmeans/Kmeans.bs 644 Manifying 1 pod document make[1]: Leaving directory `/data/fly1600/cpan/build/PDL-Stats-0.73-W9B9Q5/Kmeans' make[1]: Entering directory `/data/fly1600/cpan/build/PDL-Stats-0.73-W9B9Q5/GSL' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/data/fly1600/cpan/build/PDL-Stats-0.73-W9B9Q5/GSL' make[1]: Entering directory `/data/fly1600/cpan/build/PDL-Stats-0.73-W9B9Q5/TS' "/home/fly1600/ap1600/bin/perl-static" "-I/data/fly1600/megalib" "-MPDL::PP qw/PDL::Stats::TS PDL::Stats::TS TS/" ts.pd cp TS.pm ../blib/lib/PDL/Stats/TS.pm Running Mkbootstrap for PDL::Stats::TS () chmod 644 "TS.bs" "/home/fly1600/ap1600/bin/perl-static" "/data/fly1600/megalib/ExtUtils/xsubpp" -typemap "/home/fly1600/ap1600/lib/ExtUtils/typemap" -typemap "/data/fly1600/megalib/PDL/Core/typemap.pdl" TS.xs > TS.xsc && mv TS.xsc TS.c gcc -c "-I/data/fly1600/megalib/PDL/Core" -D_REENTRANT -D_GNU_SOURCE -DUSE_SITECUSTOMIZE -DPERL_RELOCATABLE_INCPUSH -fno-merge-constants -fno-strict-aliasing -pipe -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/home/fly1600/ap1600/lib/CORE" TS.c rm -f ../blib/arch/auto/PDL/Stats/TS/TS.so gcc -shared -O2 TS.o -o ../blib/arch/auto/PDL/Stats/TS/TS.so \ \ chmod 755 ../blib/arch/auto/PDL/Stats/TS/TS.so "/home/fly1600/ap1600/bin/perl-static" -MExtUtils::Command::MM -e 'cp_nonempty' -- TS.bs ../blib/arch/auto/PDL/Stats/TS/TS.bs 644 Manifying 1 pod document make[1]: Leaving directory `/data/fly1600/cpan/build/PDL-Stats-0.73-W9B9Q5/TS' Manifying 1 pod document ETJ/PDL-Stats-0.73.tar.gz make -- OK Running make test >>> make test TEST_VERBOSE=1 make[1]: Entering directory `/data/fly1600/cpan/build/PDL-Stats-0.73-W9B9Q5/Basic' Running Mkbootstrap for PDL::Stats::Basic () chmod 644 "Basic.bs" Manifying 1 pod document make[1]: Leaving directory `/data/fly1600/cpan/build/PDL-Stats-0.73-W9B9Q5/Basic' make[1]: Entering directory `/data/fly1600/cpan/build/PDL-Stats-0.73-W9B9Q5/Distr' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/data/fly1600/cpan/build/PDL-Stats-0.73-W9B9Q5/Distr' make[1]: Entering directory `/data/fly1600/cpan/build/PDL-Stats-0.73-W9B9Q5/GLM' Running Mkbootstrap for PDL::Stats::GLM () chmod 644 "GLM.bs" Manifying 1 pod document make[1]: Leaving directory `/data/fly1600/cpan/build/PDL-Stats-0.73-W9B9Q5/GLM' make[1]: Entering directory `/data/fly1600/cpan/build/PDL-Stats-0.73-W9B9Q5/Kmeans' Running Mkbootstrap for PDL::Stats::Kmeans () chmod 644 "Kmeans.bs" Manifying 1 pod document make[1]: Leaving directory `/data/fly1600/cpan/build/PDL-Stats-0.73-W9B9Q5/Kmeans' make[1]: Entering directory `/data/fly1600/cpan/build/PDL-Stats-0.73-W9B9Q5/GSL' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/data/fly1600/cpan/build/PDL-Stats-0.73-W9B9Q5/GSL' make[1]: Entering directory `/data/fly1600/cpan/build/PDL-Stats-0.73-W9B9Q5/TS' Running Mkbootstrap for PDL::Stats::TS () chmod 644 "TS.bs" Manifying 1 pod document make[1]: Leaving directory `/data/fly1600/cpan/build/PDL-Stats-0.73-W9B9Q5/TS' PERL_DL_NONLAZY=1 "/home/fly1600/ap1600/bin/perl-static" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/01-checkmanifest.t .. 1..1 ok 1 - missing files from MANIFEST ok t/stats_basic.t ....... ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 - cov ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 - rtable data dim ok 44 - rtable bad elem ok 45 - cov_table ok 46 - cov_table bad val ok 47 ok 48 ok 49 ok 50 # skip no PDL::GSL::CDF ok 51 - group_by single factor equal n ok 52 - group_by single factor label ok 53 - group_by single factor unequal n ok 54 - group_by multiple factors ok 55 - group_by multiple factors label ok 56 - _array_to_pdl ok 57 - _array_to_pdl with missing value undef ok 58 - _array_to_pdl with missing value undef correctly coded ok 59 - _array_to_pdl with missing value BAD ok 60 - _array_to_pdl with missing value BAD correctly coded 1..60 ok 3 subjects with missing data removed t/stats_glm.t ......... ok 1 - use PDL::Stats::Basic; ok 2 - use PDL::Stats::GLM; ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 - d0 ok 12 - dm ok 13 - dvrs ok 14 - ols_t R2 ok 15 - ols_t b ok 16 - ols_t, const=>0 ok 17 - ols ok 18 - ols with bad value didn't change caller value ok 19 - ols with bad value didn't remove caller bad flag ok 20 - ols with bad value ok 21 - r2_change ok 22 - eigenvalue ok 23 - loadings ok 24 - pct_var ok 25 - eigenvector ok 26 - corr=>0, eigenvalue ok 27 - corr=>0, loadings ok 28 - corr=>0, pct_var ok 29 - corr=>0, eigenvector ok 30 ok 31 - logistic ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 - effect_code got bad value ok 42 - effect_code coded with bad value ok 43 - effect_code_w ok 44 - anova_3w ok 45 - anova_1w ok 46 - anova_3w bad dv ok 47 - anova_3w bad dv iv ok 48 - fill_m nan to bad ok 49 - stddz nan vs bad ok 50 - anova_rptd_1w ok 51 - anova_rptd_2w bad dv ok 52 - anova_rptd_2w bad iv ok 53 - anova_rptd_3w ok 54 - anova_rptd mixed ok 55 - anova_rptd mixed with 2 btwn-subj var levels, data grouped by subject ok 56 # skip yet to be fixed ok 57 # skip yet to be fixed ok 58 # skip yet to be fixed ok 59 - anova_rptd mixed bad ok 60 - anova_rptd_mixed_4w ok 61 - interaction_code 1..61 ok t/stats_kmeans.t ...... ok 1 - use PDL::Stats::Basic; ok 2 - use PDL::Stats::Kmeans; ok 3 ok 4 - iv_cluster has bad value ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 - t_kmeans ok 11 ok 12 ok 13 ok 14 R2 0.786191536748329 centroid [ [ 1.5 5.5] [ 8.5 12] [15.5 19] ] cluster [ [1 1 1 1 0 0 0] [0 0 0 0 1 1 1] ] ms [ [ 1.25 0.25] [ 1.25 0.66666667] [ 1.25 0.66666667] ] n [4 3] ok 15 - t_kmeans_bad # TODO kmeans is undeterministic. retry to for optimal results ok 16 ok 17 ok 18 ok 19 - _d_point2line ok 20 - which_cluster 1..20 ok t/stats_ols_rptd.t .... 1..7 (ss_residual) 58.3754646504336 (ss_subject) 51.8590337714296 (ss_total) 405.18824177143 F [ 7.208473 61.354153 1.0243311] coeff [0.33337285 0.45858933 0.15162986] df [1 1 1] df_err [9 9 9] ms [ 18.450705 73.813294 0.57026483] ms_err [ 2.5595857 1.2030692 0.55671923] ss [ 18.450705 73.813294 0.57026483] ss_err [ 23.036272 10.827623 5.0104731] ok 1 - ss_total ok 2 - ss_residual ok 3 - ss_subject ok 4 - ss ok 5 - ss_err ok 6 - coeff ok 7 - F ok t/stats_ts.t .......... 1..23 ok 1 - use PDL::Stats::TS; ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 - season_m m ok 23 - season_m ms ok All tests successful. Test Summary Report ------------------- t/stats_kmeans.t (Wstat: 0 Tests: 20 Failed: 0) TODO passed: 15 Files=6, Tests=172, 5 wallclock secs ( 0.05 usr 0.03 sys + 4.29 cusr 0.18 csys = 4.55 CPU) Result: PASS make[1]: Entering directory `/data/fly1600/cpan/build/PDL-Stats-0.73-W9B9Q5/Basic' No tests defined for PDL::Stats::Basic extension. make[1]: Leaving directory `/data/fly1600/cpan/build/PDL-Stats-0.73-W9B9Q5/Basic' make[1]: Entering directory `/data/fly1600/cpan/build/PDL-Stats-0.73-W9B9Q5/Distr' make[1]: Nothing to be done for `test'. make[1]: Leaving directory `/data/fly1600/cpan/build/PDL-Stats-0.73-W9B9Q5/Distr' make[1]: Entering directory `/data/fly1600/cpan/build/PDL-Stats-0.73-W9B9Q5/GLM' No tests defined for PDL::Stats::GLM extension. make[1]: Leaving directory `/data/fly1600/cpan/build/PDL-Stats-0.73-W9B9Q5/GLM' make[1]: Entering directory `/data/fly1600/cpan/build/PDL-Stats-0.73-W9B9Q5/Kmeans' No tests defined for PDL::Stats::Kmeans extension. make[1]: Leaving directory `/data/fly1600/cpan/build/PDL-Stats-0.73-W9B9Q5/Kmeans' make[1]: Entering directory `/data/fly1600/cpan/build/PDL-Stats-0.73-W9B9Q5/GSL' make[1]: Nothing to be done for `test'. make[1]: Leaving directory `/data/fly1600/cpan/build/PDL-Stats-0.73-W9B9Q5/GSL' make[1]: Entering directory `/data/fly1600/cpan/build/PDL-Stats-0.73-W9B9Q5/TS' No tests defined for PDL::Stats::TS extension. make[1]: Leaving directory `/data/fly1600/cpan/build/PDL-Stats-0.73-W9B9Q5/TS' ETJ/PDL-Stats-0.73.tar.gz make test TEST_VERBOSE=1 -- OK Ed J <etj@cpan.org> a collection of statistics modules in Perl Data Language, with a quick-start guide for non-PDL people. >>> (cd /home/fly1600/var/cpan/build/PDL-Stats-0.73-W9B9Q5 && tar cvf - PDL-Stats-0.73.ppd blib) | gzip -c >/home/fly1600/var/REPO/E/ET/ETJ/PDL-Stats-0.73.tar.gz PDL-Stats-0.73.ppd blib/ blib/lib/ blib/lib/PDL/ blib/lib/PDL/Stats.pm blib/lib/PDL/add_doc.pl blib/lib/PDL/Stats/ blib/lib/PDL/Stats/Basic.pm blib/lib/PDL/Stats/GLM.pm blib/lib/PDL/Stats/Kmeans.pm blib/lib/PDL/Stats/TS.pm blib/arch/ blib/arch/auto/ blib/arch/auto/PDL/ blib/arch/auto/PDL/Stats/ blib/arch/auto/PDL/Stats/Basic/ blib/arch/auto/PDL/Stats/Basic/Basic.so blib/arch/auto/PDL/Stats/GLM/ blib/arch/auto/PDL/Stats/GLM/GLM.so blib/arch/auto/PDL/Stats/Kmeans/ blib/arch/auto/PDL/Stats/Kmeans/Kmeans.so blib/arch/auto/PDL/Stats/TS/ blib/arch/auto/PDL/Stats/TS/TS.so blib/man3/ blib/man3/PDL::Stats::Basic.3 blib/man3/PDL::Stats::GLM.3 blib/man3/PDL::Stats::Kmeans.3 blib/man3/PDL::Stats::TS.3 blib/man3/PDL::Stats.3 >>> mv /home/fly1600/var/cpan/build/PDL-Stats-0.73-W9B9Q5/PDL-Stats-0.73.ppd /home/fly1600/var/REPO/E/ET/ETJ VmSize: 271132 kB Finished 2015-09-18T02:08:45